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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016479249.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 26087.1 Da PI: 7.293 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.1 | 1.6e-16 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d s + r +lg+f+ aeeAa a+++a++ l+g XP_016479249.1 39 KFIGVRQRP-SGRWVAEIKDSS----QeLRLWLGTFDRAEEAALAYDNAARLLRG 88 899******.7*********42....35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.59E-29 | 38 | 98 | No hit | No description |
SuperFamily | SSF54171 | 6.21E-19 | 39 | 97 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-27 | 39 | 96 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-10 | 39 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.256 | 39 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-30 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MESSKSQSSE SLNNSSKNIQ EKQVIKRKSK LISSNDGKKF IGVRQRPSGR WVAEIKDSSQ 60 ELRLWLGTFD RAEEAALAYD NAARLLRGRN AKTNFKYQGI LKPNEENCSL LEKNPRLYQL 120 LKLAIMKKLA GNRYQNEIET EAFVQENMGC DQDKEEICRI QLQGSSSKVY SSVIVAPSFS 180 ASVADQSGKK DQEEEEEVEE NHYQTSAQLF ECLFSHANKS SAENNGLNSS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-14 | 37 | 95 | 3 | 62 | ATERF1 |
3gcc_A | 4e-14 | 37 | 95 | 3 | 62 | ATERF1 |
5wx9_A | 5e-14 | 39 | 109 | 14 | 78 | Ethylene-responsive transcription factor ERF096 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016479249.1 | 1e-169 | PREDICTED: ethylene-responsive transcription factor SHINE 2-like | ||||
TrEMBL | A0A1S4ARD9 | 1e-167 | A0A1S4ARD9_TOBAC; ethylene-responsive transcription factor SHINE 2-like | ||||
STRING | XP_009762079.1 | 1e-153 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-17 | related to AP2 11 |