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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016478795.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 251aa MW: 28752.1 Da PI: 6.6342 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.5 | 5.4e-29 | 87 | 174 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p XP_016478795.1 87 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSP 174 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.8E-26 | 87 | 174 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDFVVDDHIV GEEEEGTVVE VRAVDENAVG GSSSEEALHN VHDVKVDEDL SDREVVPLEE 60 SQSLGNSTSD EPYVGQEFES EAAAHAFYNA YATRVGFIIR VSKLSRSRRD GSAIGRALVC 120 NKEGFRMPDK REKIVRQRAE TRVGCRAMIL VRKVSSGKWV VTKFVKEHTH PLSPGKGRRD 180 LIYDQYPNEH DKIRELSQQL AAEKKRSATY KRHLEMIFEH IEEHNQSLSK KIQDIVHNVR 240 EMESRDQHHH R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605657.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_016478795.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
Swissprot | Q9SZL8 | 4e-27 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1S4AQF2 | 0.0 | A0A1S4AQF2_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
STRING | XP_009605656.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 4e-98 | FAR1 family protein |
Publications ? help Back to Top | |||
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