PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

XP_016478052.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 732aa MW: 80956 Da PI: 7.1639

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016478052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	441	478	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_016478052.1 441 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 478 554459******************************88 PP
2	BELL	119.7	1.3e-38	302	373	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+s+l+eV++rY+qy++q+q++++sFe++ag+gsak+Yt+lAl++iS++FrcLkdai++qi XP_016478052.1 302 QRQELQMKKAKLISMLDEVEQRYRQYHHQMQIIVASFEEAAGIGSAKSYTQLALHTISKQFRCLKDAITGQI 373 69*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-57	223	371	IPR006563	POX domain
Pfam	PF07526	3.9E-47	230	370	IPR006563	POX domain
PROSITE profile	PS50071	12.05	419	482	IPR001356	Homeobox domain
SMART	SM00389	4.2E-10	422	486	IPR001356	Homeobox domain
CDD	cd00086	5.95E-12	422	483	No hit	No description
SuperFamily	SSF46689	5.56E-17	423	489	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-29	425	488	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	439	478	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MAMYYQGSSE IQADGLQTLY LMNPNYIGYT DTQQQEQQQQ QHLQQANMFF LNSGTAGNLP 60 LGQLPSQAHT QHFVGVPLQT SFQDPSRPSV HEVSHHGLLQ RLWSSNGQNS GGSGGNESQS 120 HIPSAVVSPN SGGGTTTDFA SQLGFQRPGL VSPTQQHQGL SLSLSPQQQQ QQQQQQMINF 180 RSFPLDHHEI SPHNNHQVGI LSSSSPRTNT NNDHIRGSGA SSSSFSNGMI VGSKYLKAAQ 240 ELLDEVVNVG KNIKEVGAKE KDKLLDNELM PLSSDVAAAA PTSGSGESSS QKNSVAELTT 300 VQRQELQMKK AKLISMLDEV EQRYRQYHHQ MQIIVASFEE AAGIGSAKSY TQLALHTISK 360 QFRCLKDAIT GQIKATSKSL GEEEINLGGK IEGSSSRLRF VDHHLRQQRA LQQLGMMQPN 420 AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK DSDKIMLAKQ TGLTRSQVSN WFINARVRLW 480 KPMVEEMYLE EVKNNQEQNG LEENANKNNE PNKEMCTKSS APQETTNLRK DKQISSILQD 540 ASPTEISSST ISTSPTGGSL PAQAAGFSFI GSLNMENSTS ERNNKKARND MQNSSSSILS 600 METEMKAGDT RKGEKFNGDN RQARDQSYPL MTAYSTMGEF GRFNPEQQMA TSFQGNGVSL 660 TLGLPPSENL VLSGSQHNFL PNQNIGIEMG RIETHYNRMS NPQPSHPNIT YENIDFQSGK 720 RYAAQLLPDF VS

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MAMYYQGSSE IQADGLQTLY LMNPNYIGYT DTQQQEQQQQ QHLQQANMFF LNSGTAGNLP  60
LGQLPSQAHT QHFVGVPLQT SFQDPSRPSV HEVSHHGLLQ RLWSSNGQNS GGSGGNESQS  120
HIPSAVVSPN SGGGTTTDFA SQLGFQRPGL VSPTQQHQGL SLSLSPQQQQ QQQQQQMINF  180
RSFPLDHHEI SPHNNHQVGI LSSSSPRTNT NNDHIRGSGA SSSSFSNGMI VGSKYLKAAQ  240
ELLDEVVNVG KNIKEVGAKE KDKLLDNELM PLSSDVAAAA PTSGSGESSS QKNSVAELTT  300
VQRQELQMKK AKLISMLDEV EQRYRQYHHQ MQIIVASFEE AAGIGSAKSY TQLALHTISK  360
QFRCLKDAIT GQIKATSKSL GEEEINLGGK IEGSSSRLRF VDHHLRQQRA LQQLGMMQPN  420
AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK DSDKIMLAKQ TGLTRSQVSN WFINARVRLW  480
KPMVEEMYLE EVKNNQEQNG LEENANKNNE PNKEMCTKSS APQETTNLRK DKQISSILQD  540
ASPTEISSST ISTSPTGGSL PAQAAGFSFI GSLNMENSTS ERNNKKARND MQNSSSSILS  600
METEMKAGDT RKGEKFNGDN RQARDQSYPL MTAYSTMGEF GRFNPEQQMA TSFQGNGVSL  660
TLGLPPSENL VLSGSQHNFL PNQNIGIEMG RIETHYNRMS NPQPSHPNIT YENIDFQSGK  720
RYAAQLLPDF VS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	428	486	5	63	Homeobox protein Meis2
3k2a_B	5e-16	428	486	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778869.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_009778870.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_009778871.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_016478049.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_016478051.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_016478052.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
TrEMBL	A0A1S4AMV2	0.0	A0A1S4AMV2_TOBAC; BEL1-like homeodomain protein 1
TrEMBL	A0A1U7WNJ6	0.0	A0A1U7WNJ6_NICSY; BEL1-like homeodomain protein 1
STRING	XP_009778869.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	2e-94	BEL1-like homeodomain 1