PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477957.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 412aa    MW: 45213.1 Da    PI: 5.5289
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++ + +C+++  +lC +C  + H+       H++
  XP_016477957.1  4 ICEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalserHSR 44
                    7*****************************65777777776 PP
2zf-B_box22.91.7e-074678436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                     +C++++++++   C + ++ lC++C  ++H +
  XP_016477957.1 46 LICERCNSQPAVVRCIEEKTSLCQNCDWSGHAS 78
                    68*****************************65 PP
3CCT59.79.7e-21356399144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a+lRYkeK+ktRkF+K++rY sRKa+A+ R RvKGrFvk+ 
  XP_016477957.1 356 RSNAVLRYKEKKKTRKFDKRVRYVSRKARADVRRRVKGRFVKAG 399
                     899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.428147IPR000315B-box-type zinc finger
CDDcd000218.93E-8447No hitNo description
SMARTSM003366.0E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501198.7744391IPR000315B-box-type zinc finger
CDDcd000210.001074773No hitNo description
PfamPF062033.3E-15356398IPR010402CCT domain
PROSITE profilePS5101715.021356398IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGYICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSE RHSRTLICER CNSQPAVVRC  60
IEEKTSLCQN CDWSGHASSS SSGSTHMRQA LSSYTGCPSA AELSNSWSFL LDDPSIGASC  120
EQRMGTMSIK DNRPRDGQGP QGKENSQNMR AAVEVNDMDI SEKSNLLVES STPALDNKQH  180
NVESPIRFSN STMSKGGYMG AKGSSLFEED PYCDNLIMDA VDLSIENYEE LFGASLNYPD  240
ELFENENFDG LFGMKDIKSA DSNCRGANAA EGSSIARVNT VQPTCSNAES ADSAMSCKTD  300
SILYFARQSS LSFSNQTGES TAGDHQDCGV SPMLLMGEPP PWGPPCPEPS SSSTSRSNAV  360
LRYKEKKKTR KFDKRVRYVS RKARADVRRR VKGRFVKAGD AYDYDPLPTR SY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-153HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477957.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA91e-128COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A1S4AML00.0A0A1S4AML0_TOBAC; zinc finger protein CONSTANS-LIKE 9-like
STRINGXP_009605082.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.14e-91B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]