PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477918.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 291aa    MW: 33144.5 Da    PI: 7.8925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.3e-1490141155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  XP_016477918.1  90 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 141
                     79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.26E-1488145No hitNo description
SuperFamilySSF474591.07E-1789163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.81589140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1490158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1190141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-1095146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MALETVVFQQ DPFTYSHKDI YNLGGFFHEY NWDSSHSSIA QSYNNNSSSP EVCTGFLPAE  60
YPPVETPVVS CRRKRRRTKC SKNKEEIENQ RMTHIAVERN RRRQMNDYLA VLRSLMPPSY  120
AQRGDQASIV GGAINFVKEL EQLLQFLEAH KQEVKKQSSP NNASQHPFSK FFTFPQYATA  180
NNHPMATAYD GATTEERRSA VADIEVTMVE SHANVKVLSR RRPKQLLKIV NWLQAMCFTI  240
LHLTVSTADH TVLYSFSVKV EDNCQLNTVS EIASAVHEMV AMIIKEEAMS C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276RKRRR
27277RKRRRT
390101RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754506e-35HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477918.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T45e-80BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S4AN940.0A0A1S4AN94_TOBAC; transcription factor bHLH96-like
STRINGXP_009625368.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]