PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016477727.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 464aa MW: 50283.6 Da PI: 7.0244

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016477727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.1	1e-15	282	327	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++++P++ K +Ka++L +++eY+k+Lq XP_016477727.1 282 HNQSERKRRDKINQRMKTLQKMVPNS-----SKTDKASMLDEVIEYLKQLQ 327 9**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-19	275	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.606	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-13	282	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-18	282	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.58E-16	282	330	No hit	No description
SMART	SM00353	1.1E-17	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MNQCVPSWEL DDTPTPPKLP LQTQSNSLAP DVPSLDYEVA ELTWENGQLA MHGLGPPRVP 60 NNKPISNYGG TLESIVNQGT RSVPHHHQKF ALDGSGHGGD EVVPWFNYHH VVADTPLVPG 120 SLTMAKDALV PCSANSNYHR RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP 180 THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT 240 GDDHDSVCHS RSKREVGDEE DEKKGSKNSS SSTKRKRAAA IHNQSERKRR DKINQRMKTL 300 QKMVPNSSKT DKASMLDEVI EYLKQLQSQV NMMSRMNMSP AMMLPLAMQQ QLQMSMMAAP 360 MGMGMGMGMG MGVAGVLDIN TLSRPNITGL PPFLHPTAAA AAAFMQPMTS WDGSTDRLNA 420 AAVPDPLAAL LACQSQPMTM DAYSRMAALY QQFQQPAAGS GPKN

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MNQCVPSWEL DDTPTPPKLP LQTQSNSLAP DVPSLDYEVA ELTWENGQLA MHGLGPPRVP  60
NNKPISNYGG TLESIVNQGT RSVPHHHQKF ALDGSGHGGD EVVPWFNYHH VVADTPLVPG  120
SLTMAKDALV PCSANSNYHR RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP  180
THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT  240
GDDHDSVCHS RSKREVGDEE DEKKGSKNSS SSTKRKRAAA IHNQSERKRR DKINQRMKTL  300
QKMVPNSSKT DKASMLDEVI EYLKQLQSQV NMMSRMNMSP AMMLPLAMQQ QLQMSMMAAP  360
MGMGMGMGMG MGVAGVLDIN TLSRPNITGL PPFLHPTAAA AAAFMQPMTS WDGSTDRLNA  420
AAVPDPLAAL LACQSQPMTM DAYSRMAALY QQFQQPAAGS GPKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	289	RKRAAAIHNQSERKRR
2	285	290	ERKRRD
3	286	291	RKRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016477727.1	0.0	PREDICTED: transcription factor UNE10-like
Swissprot	Q8GZ38	1e-104	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A1S4ALX7	0.0	A0A1S4ALX7_TOBAC; transcription factor UNE10-like
STRING	XP_009586991.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4367	21	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	9e-80	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]