PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016477504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 20442.1 Da PI: 6.4845 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 66 | 8.9e-21 | 2 | 95 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlrr+C+++C+l+ ++ p +q++++ +v k+FG+s ++ +++a+pe++r+ A+ r+ +Pv Gavg++++++++++q+++ XP_016477504.1 2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQANATLFVSKFFGRSDLMAFIAAVPENRRP---------ACGRTVNPVTGAVGLLSTGNWHVCQKAV 89 6*********************************************************98.........89************************** PP DUF260 93 elallk 98 e++l++ XP_016477504.1 90 ETVLVG 95 998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.288 | 1 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.7E-17 | 2 | 92 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQANATLFVS KFFGRSDLMA FIAAVPENRR 60 PACGRTVNPV TGAVGLLSTG NWHVCQKAVE TVLVGGNLRP VFAGILTPYM NETFESFRCG 120 GAWDIPNQFS NKSGSFTDGS DHIDTTEWVG LEKRWNTTSS IGSETELSDV SLGLDSGNKE 180 PKLLNLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606112.1 | 1e-137 | PREDICTED: LOB domain-containing protein 38-like isoform X2 | ||||
Refseq | XP_016477504.1 | 1e-137 | PREDICTED: LOB domain-containing protein 38-like isoform X2 | ||||
Swissprot | Q9SN23 | 1e-44 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A1S4ALI4 | 1e-136 | A0A1S4ALI4_TOBAC; LOB domain-containing protein 38-like isoform X2 | ||||
STRING | XP_009606111.1 | 1e-134 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 4e-47 | LOB domain-containing protein 38 |