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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016477217.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 123aa MW: 13992 Da PI: 9.8494 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.7 | 2.7e-17 | 11 | 60 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHH.HHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeEL.SvLCdaevaviifsstgklyey 49 k+i +s r vtfskRr+g++KKA EL S +++va+++fs+tgk y+y XP_016477217.1 11 KKITKESSRMVTFSKRRKGLFKKAVELqSKTSGTQVAILVFSPTGKPYTY 60 678999*********************88899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.923 | 3 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.2E-21 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-21 | 4 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-9 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-20 | 12 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-9 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MGTGKKKIEI KKITKESSRM VTFSKRRKGL FKKAVELQSK TSGTQVAILV FSPTGKPYTY 60 GGNDVLNTFE HHCDSSHSNG MTWDSNFNVE TCHDVNELLM FKAHLERTRD KLVESQFFES 120 TVL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016477217.1 | 9e-88 | PREDICTED: agamous-like MADS-box protein AGL28 | ||||
TrEMBL | A0A1S4AKI8 | 2e-86 | A0A1S4AKI8_TOBAC; agamous-like MADS-box protein AGL28 | ||||
STRING | XP_009796162.1 | 6e-32 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-12 | AGAMOUS-like 29 |