PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477119.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 275aa    MW: 29090.6 Da    PI: 8.3809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016106128123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k Fs+   L  H  +H
  XP_016477119.1 106 YKCSVCDKAFSSYQALGGHKASH 128
                     9***********99999998887 PP
2zf-C2H213.90.00016166188123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F++   L  H r+H
  XP_016477119.1 166 HVCSICHKAFPTGQALGGHKRRH 188
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.57E-9105128No hitNo description
SMARTSM003550.0073106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263106128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4106128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-13106130IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576677.57E-9161188No hitNo description
SMARTSM003550.065166188IPR015880Zinc finger, C2H2-like
PfamPF139128.9E-12166190IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619166193IPR007087Zinc finger, C2H2
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MALEALKSPT TATPTLPPRY VDVDEIHNLD SWAKGKRSKR PRIDTPPTEE EYLALCLIML  60
ARSGNGTGPG LTDAATISQQ TSEKKTAELP PVHKKEVSTE QTEQSYKCSV CDKAFSSYQA  120
LGGHKASHRK ITTTTTAAAS DDNNPSTSTS TSAVNISALN PTGRSHVCSI CHKAFPTGQA  180
LGGHKRRHYE GKLGGNSRDL GGGGGGGHSG SVLTTSDGGA STHTLRDFDL NMPASPELQL  240
GLSIDCGRKS QLLPIDQEVE SPMPAKKPRL LFSLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0530770.0AF053077.1 Nicotiana tabacum osmotic stress-induced zinc-finger protein (zfp) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477119.10.0PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A1S4AKI00.0A0A1S4AKI0_TOBAC; zinc finger protein ZAT10-like
STRINGXP_009625229.11e-171(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-53salt tolerance zinc finger