PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016476643.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 184aa MW: 21327.6 Da PI: 10.6768

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016476643.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.6	4.4e-13	55	82	29	56
HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56 +++eLA+kl+L+ rqV vWFqNrRa+ k XP_016476643.1 55 QKQELAAKLKLKPRQVEVWFQNRRARTK 82 89************************98 PP
2	HD-ZIP_I/II	87.9	1.3e-28	54	116	27	89
HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eLr+ XP_016476643.1 54 GQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCQSLNDENSRLKKELQELRS 116 69***********************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	9.5E-4	29	88	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	53	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-10	54	93	IPR009057	Homeodomain-like
Pfam	PF00046	1.8E-10	55	82	IPR001356	Homeobox domain
CDD	cd00086	2.29E-7	55	85	No hit	No description
PROSITE profile	PS50071	12.325	55	84	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
SMART	SM00340	3.3E-17	84	127	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	6.8E-10	84	116	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MLGHVAVQKR DTRNPRRGHG QRPKATVSNN AHKGVINALR LITFNREYSM ALRGQKQELA 60 AKLKLKPRQV EVWFQNRRAR TKLKQTEVDC EFLKKWCQSL NDENSRLKKE LQELRSIKID 120 QWASPFHLQL PKIRTIALCP SCQKTENIKS EQKHCDLDCG NRKVANDAMS KEANSETILV 180 NEKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	84	RRARTKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975519	2e-40	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016476643.1	1e-135	PREDICTED: homeobox-leucine zipper protein HOX1-like
TrEMBL	A0A1S4AJP6	1e-133	A0A1S4AJP6_TOBAC; homeobox-leucine zipper protein HOX1-like
STRING	XP_009630679.1	4e-91	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	8e-33	HD-ZIP family protein