PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476583.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 427aa    MW: 46672.7 Da    PI: 8.2858
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.2e-114267227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG C++G++C+F+H+p
  XP_016476583.1 42 GEPDCSYYIRTGLCRFGSTCQFNHPP 67
                    6899********************97 PP
2zf-CCCH37.73.4e-1290112527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tGtCk+G++CkF+H++
  XP_016476583.1  90 ECQYYLKTGTCKFGATCKFHHPR 112
                     7********************96 PP
3zf-CCCH34.34.1e-11135158427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      +C +++rt +Ck+G++CkF+H++
  XP_016476583.1 135 NECTYYMRTAQCKFGSTCKFHHPE 158
                     68********************96 PP
4zf-CCCH36.67.5e-12289313327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tG Ck+G+ C+F+H++
  XP_016476583.1 289 QPECQFYMKTGDCKFGAVCRFHHPR 313
                     799********************96 PP
5zf-CCCH36.11.1e-11335359327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C f++r+G+Ck+G++CkF H++
  XP_016476583.1 335 EPMCIFYSRYGICKFGPSCKFDHPM 359
                     689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1924068IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-54067IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-54568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-44666IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9285113IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-585112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-689114IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-990112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-591112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986131159IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018131158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6132159IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-9134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911286314IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5286313IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8289313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6289316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5292316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295332360IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4332359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5335359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4337357IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8338359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDISVSEGPP SLSPSLRQDS LWQMNLRSME SMESGPYPVR EGEPDCSYYI RTGLCRFGST  60
CQFNHPPNRK LALAAASMNG EYPERIGQLE CQYYLKTGTC KFGATCKFHH PRDKAGIAGR  120
VTLNVLGYPL RPNENECTYY MRTAQCKFGS TCKFHHPEPS NMMVSSRGSP VYPPGPSPTT  180
PGQMSYPLSR ASFISGARWQ GSSSYAPLPV LQGVVSFPGF TYNGQLGSVS SAEGQQQTAG  240
NSQVYGSSCS SDKATMGSEG MNSSYRVSSL PVGYYALQGE NVFPERVGQP ECQFYMKTGD  300
CKFGAVCRFH HPRERLLPPP DCLLSPIGLP LRAGEPMCIF YSRYGICKFG PSCKFDHPMR  360
VFTYNISASS STDDPSVRRL LGSSSGTGAL TLTSEGIVEA ASTTPRRLSL LETRKMPPGD  420
NNFDREG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476583.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_016476584.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_016476585.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_016476586.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_016476587.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S4AIR30.0A0A1S4AIR3_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGXP_009769498.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-166zinc finger protein 1