PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016476574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 285aa MW: 30748.3 Da PI: 4.4243 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 260 | 281 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+++F + L++H + H XP_016476574.1 260 CKTCNRTFGSETALESHSKAkH 281 *****************88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.094 | 258 | 285 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.4E-6 | 260 | 282 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 260 | 281 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MEFWGAEVKS GQPLTVQPGD DMVLHLSQAS LGEAKKDKGS EPVCLSVNVD GKKLVLGTLN 60 LDKLPQQQFD LVFDRDFELS HNWKNGSVYF FGYKAANPYE QEDDEEDEDE SDEEIPLTLA 120 NIGKAEAKAS ANDSTSGKQK VKIAEPSKDA KADDEDDSSD EDDTSEDEED SEMGEDEDDS 180 DEDKSDEETP KKAEPSKKRP ADSATKTPAP DKKAKFATPQ KADGKKGAVH VATPHPSKQA 240 GKTPGNKSNQ TPKSGGALAC KTCNRTFGSE TALESHSKAK HSAGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ903176 | 0.0 | FJ903176.1 Nicotiana tabacum cultivar Xanthi type 2 histone deacetylase c (HD2c) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016476574.1 | 0.0 | PREDICTED: histone deacetylase HDT1-like isoform X1 | ||||
Swissprot | Q6V9I6 | 1e-112 | HDT1_SOLCH; Histone deacetylase HDT1 | ||||
TrEMBL | A0A1S4AIY6 | 0.0 | A0A1S4AIY6_TOBAC; histone deacetylase HDT1-like isoform X1 | ||||
STRING | XP_009791887.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3176 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 4e-35 | histone deacetylase 3 |
Publications ? help Back to Top | |||
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