PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016476526.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 179aa MW: 20958.4 Da PI: 10.8926

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016476526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.6	2.3e-13	63	157	1	85
EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt+sdv ++ grl l ++ +++ g++ + ++++t d+ +s++++++ +++ ++yvl + W++Fvk+++Lke+D v+ + XP_016476526.1 63 FEKQLTKSDVDEHqGRLLLNNEDVRSKllpllngknGENLAHGVKVTTFDQLCNSYKMNFKTWGNYRSYVLLGSWRQFVKDHKLKENDHVTVWMF 157 99********9899****999*987755556777788777777999999999************************9985533 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	8.63E-18	63	167	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	9.7E-5	63	169	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-9	63	163	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.6E-16	63	165	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.61E-14	63	169	No hit	No description
PROSITE profile	PS50863	8.797	117	173	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MSKIWPPFFM SKESRKLQKS KRKISKPIPK KIRISPSTLT NLPKLPPVQN LRGIIGTICS 60 DPFEKQLTKS DVDEHQGRLL LNNEDVRSKL LPLLNGKNGE NLAHGVKVTT FDQLCNSYKM 120 NFKTWGNYRS YVLLGSWRQF VKDHKLKEND HVTVWMFRHN QTNSLCFAIT WKRNFSKDR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763569.1	1e-131	PREDICTED: putative B3 domain-containing protein At4g03170
Refseq	XP_016476526.1	1e-131	PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBL	A0A1S4AIQ4	1e-129	A0A1S4AIQ4_TOBAC; putative B3 domain-containing protein At4g03170
TrEMBL	A0A1U7VMH6	1e-129	A0A1U7VMH6_NICSY; putative B3 domain-containing protein At4g03170
STRING	XP_009763569.1	1e-130	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6430	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	4e-25	B3 family protein