PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476438.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 536aa    MW: 61207.4 Da    PI: 8.6823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017467489123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kCp C++ F++   L  H r+H
  XP_016476438.1 467 HKCPFCPRIFKSGQALGGHKRSH 489
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.5E-7931IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141936IPR007087Zinc finger, C2H2
SMARTSM003550.19931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.18100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66100127IPR007087Zinc finger, C2H2
SuperFamilySSF576672.92E-7101122No hitNo description
PfamPF139121.2E-7102124IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SuperFamilySSF576672.92E-7376403No hitNo description
PROSITE profilePS501579.245381408IPR007087Zinc finger, C2H2
PfamPF139121.9E-8381405IPR007087Zinc finger, C2H2
SMARTSM003555.9381403IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280383403IPR007087Zinc finger, C2H2
PfamPF139123.9E-7467489IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099467497IPR007087Zinc finger, C2H2
SMARTSM003550.031467489IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280469489IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MEEDQVMKFV CKLCNKRYPC GKSLGGHMRS HVLANSAEFE ENFEAKLKKV QSWSNINGKN  60
FKRENQSKLE LGGVSSYGLR ENPKKTWRAE DSNFPLPQEK VCQQCGKVFQ SLKALCGHMA  120
CHSEKDKGCL NLKDDNSWTS ESNSDTEAEE LFSPKCRSKT KRYKKIIVKS SICKVNNNYN  180
CSSSVSEIDH EQEQEEVAKC LMMLSRDSGI WNGVNIVVES SDNNSVVLET KSSSNDMRNA  240
RNNTLKRAYN QDEKPQTKKK EDRDLKRDIL EAETQSENSD SDYFLGENGK VDSDGSVERF  300
RGNGNCKWSS SKMSLGAWLD ERRHDEKKSL NRIKRYLTES RKDLSKKYEH DGYGLASNFD  360
KCESRKGTTD RYKNIHKKRK YECLNCKKTF SSYQALGGHR PCHKKINDYS ESTYETGENS  420
LGADNDPKYI NIGKHKETFS NKKPAVSTQD VPYEPEKKVK PKKSKGHKCP FCPRIFKSGQ  480
ALGGHKRSHF IHASVNEENL NQSSAVKREV ADLLDLNLPA PVDDEDDEHE HARFMS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631802.10.0PREDICTED: uncharacterized protein LOC104121485 isoform X2
RefseqXP_016476438.10.0PREDICTED: uncharacterized protein LOC107798024 isoform X2
TrEMBLA0A1S4AJ400.0A0A1S4AJ40_TOBAC; uncharacterized protein LOC107798024 isoform X2
STRINGXP_009631793.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-63C2H2-like zinc finger protein