 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016476136.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 245aa MW: 28116.8 Da PI: 8.4133 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016476136.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 95.9 | 1.8e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye+ss
XP_016476136.1 9 KKIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSTRGKLYEFSS 59
68***********************************************96 PP
|
| 2 | K-box | 88.8 | 1e-29 | 84 | 175 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
++++e+ ++e+ kLk+++e+Lqr qRhllG++L++L++ eL++Le qL++slk+i+s++++l+l+q+ +lq kek e+nk L++klee
XP_016476136.1 84 GRDSNEEKFYREYLKLKAKYESLQRYQRHLLGDELGPLNIDELEHLELQLDTSLKHIKSTRTQLMLDQLTDLQTKEKLWIEANKGLERKLEE 175
5688999**********************************************************************************987 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 5.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.898 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.39E-42 | 2 | 78 | No hit | No description |
| SuperFamily | SSF55455 | 3.53E-32 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.6E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.6E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.6E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.0E-24 | 86 | 173 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.672 | 89 | 179 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MGRGRVELKK IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFST RGKLYEFSST 60
SNTLKTLERY QKCSYGTLEV KQSGRDSNEE KFYREYLKLK AKYESLQRYQ RHLLGDELGP 120
LNIDELEHLE LQLDTSLKHI KSTRTQLMLD QLTDLQTKEK LWIEANKGLE RKLEEIYAEN 180
NLQQSWGGGE QSGAYSQQHP QTQGFFQPLE CNSTLQIGYD PASSSQITAV TSGQNINGIV 240
PGWML
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 2e-25 | 95 | 173 | 23 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 2e-25 | 95 | 173 | 23 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 2e-25 | 95 | 173 | 23 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 2e-25 | 95 | 173 | 23 | 101 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
