PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016475931.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 766aa MW: 87415 Da PI: 7.7068

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016475931.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	96.8	2.5e-30	76	164	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+s+ ++s+r++ i +r++vCskeg++ + +++ +k rr+r ++r+gCka+l+vkk+ +gkw +tk++++HnHel+p XP_016475931.1 76 FYNSYARRVGFGTRVSAYRRSRRDNIISSRQLVCSKEGFNPRPDEQ-HKPRRQRIVSRVGCKAHLTVKKQASGKWAITKFVKDHNHELVP 164 9*************************************999999.99*************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-27	76	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.0E-28	282	372	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.09	566	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-10	568	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.4E-8	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence Send to blast
MFSSFYSIVN LIMESQPLNL ENDAMEFDVG SGEEEEEEDN YKHSSSGLDS RDQCSSSDLE 60 PYEGMEFESE QAARIFYNSY ARRVGFGTRV SAYRRSRRDN IISSRQLVCS KEGFNPRPDE 120 QHKPRRQRIV SRVGCKAHLT VKKQASGKWA ITKFVKDHNH ELVPPDQVHL LRSHRHVSGP 180 ARSLIDTLQA AGLGATRVMS VLIKQSGGIN NVGFTKSDCQ NYMNQTRQRT LGTGAHYILE 240 YLKQKQAEDP GFFYVVQGGP SGNIFWADST SRMNYSYFGD TVTFDTTYRT HRFRVPFAPF 300 IGVNHHCQPV LFGCALLLNE SESSFIWLFQ NWLAAMSGRH PVSITTDHDR IIRSAIADVF 360 PGARHRFCKS NIFRQVQERL SHSLQLFPIF EAEFQKCVNS PETIEEFELC WESLLGRYNL 420 KDDEWLHSMY DARQHWVPIY LRDTFFGETS IAKTSDTTNS FFDGYIDAST NIHILMTRYE 480 KATASRHEKE VKAENDTIYI SPILKTPSPM EKQAANLYTR EIFLMFQREL METLAYPATV 540 INDTRPDVVY QVAKFGEDHK VHYVQYNVFE KKASCSCQLF AFSGIPCKHI LAVFRVKNIL 600 RLPSHYVLKR WTRKAKSEVV LDEDDLGLPS SHNESFTARF EKLSLEATKY VKEGVDSENV 660 YKVAMDALRG ASKKVAAAMC STPAAPKSLD MNKAKEFNLN GNQAGCGDSC LVSQDEKILE 720 LTTAVVNATG ICEAYRAKLL SILREMEEQK LRISLKIQSM RFNQMT

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence Send to blast

MFSSFYSIVN LIMESQPLNL ENDAMEFDVG SGEEEEEEDN YKHSSSGLDS RDQCSSSDLE  60
PYEGMEFESE QAARIFYNSY ARRVGFGTRV SAYRRSRRDN IISSRQLVCS KEGFNPRPDE  120
QHKPRRQRIV SRVGCKAHLT VKKQASGKWA ITKFVKDHNH ELVPPDQVHL LRSHRHVSGP  180
ARSLIDTLQA AGLGATRVMS VLIKQSGGIN NVGFTKSDCQ NYMNQTRQRT LGTGAHYILE  240
YLKQKQAEDP GFFYVVQGGP SGNIFWADST SRMNYSYFGD TVTFDTTYRT HRFRVPFAPF  300
IGVNHHCQPV LFGCALLLNE SESSFIWLFQ NWLAAMSGRH PVSITTDHDR IIRSAIADVF  360
PGARHRFCKS NIFRQVQERL SHSLQLFPIF EAEFQKCVNS PETIEEFELC WESLLGRYNL  420
KDDEWLHSMY DARQHWVPIY LRDTFFGETS IAKTSDTTNS FFDGYIDAST NIHILMTRYE  480
KATASRHEKE VKAENDTIYI SPILKTPSPM EKQAANLYTR EIFLMFQREL METLAYPATV  540
INDTRPDVVY QVAKFGEDHK VHYVQYNVFE KKASCSCQLF AFSGIPCKHI LAVFRVKNIL  600
RLPSHYVLKR WTRKAKSEVV LDEDDLGLPS SHNESFTARF EKLSLEATKY VKEGVDSENV  660
YKVAMDALRG ASKKVAAAMC STPAAPKSLD MNKAKEFNLN GNQAGCGDSC LVSQDEKILE  720
LTTAVVNATG ICEAYRAKLL SILREMEEQK LRISLKIQSM RFNQMT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798613.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_016475931.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S4AH04	0.0	A0A1S4AH04_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1U7Y656	0.0	A0A1U7Y656_NICSY; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_009798613.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]