 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016475882.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
bHLH |
| Protein Properties |
Length: 285aa MW: 32279.7 Da PI: 8.0681 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016475882.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 40.3 | 5.6e-13 | 105 | 152 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq
XP_016475882.1 105 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 152
6799************************.....9******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MSQNIYLERP LKNPKTNQSW NNSYENDHIL SSHLINSNNY TNQVVNVKPK EEMSTISSNS 60
SITFATEHQN MVSQESFANQ NYMFKANCQG AKSTVSTNGK LTQAQDHIIA ERKRREKLSQ 120
RFIALSALIP GLKKMDKASV LGDAIKYLKQ LQERVKTLEE QTKKKSVESV VFIKKYELYG 180
DGENSSSDEN YSSGTLPIDE PLPEIEARFS ERDVLVRIHC EKKKGLVDKT VAEIEKLHLS 240
VINTCALSFG TSALDITIIA QMDEEFAMTV QDFVKNLRSA LKIFM
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 9e-14 | 106 | 155 | 8 | 57 | Transcription factor MYC2 |
| 5gnj_B | 9e-14 | 106 | 155 | 8 | 57 | Transcription factor MYC2 |
| 5gnj_E | 9e-14 | 106 | 155 | 8 | 57 | Transcription factor MYC2 |
| 5gnj_F | 9e-14 | 106 | 155 | 8 | 57 | Transcription factor MYC2 |
| 5gnj_G | 9e-14 | 106 | 155 | 8 | 57 | Transcription factor MYC2 |
| 5gnj_I | 9e-14 | 106 | 155 | 8 | 57 | Transcription factor MYC2 |
| 5gnj_M | 9e-14 | 106 | 155 | 8 | 57 | Transcription factor MYC2 |
| 5gnj_N | 9e-14 | 106 | 155 | 8 | 57 | Transcription factor MYC2 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 110 | 115 | ERKRRE |
| 2 | 111 | 116 | RKRREK |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC238928 | 1e-140 | AC238928.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-79n4 map 1, complete sequence. |
| GenBank | HG975513 | 1e-140 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
