PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016475708.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 445aa MW: 50228.8 Da PI: 6.976

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016475708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.7	4.5e-18	89	179	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v++ +l++p+kf++++ +k ++ t++l de+ +++ k+ ++k++ l++GW++F a++L egDf+vF+l++ +f +v XP_016475708.1 89 FVKYMLHSHVSRGFWLSFPRKFCDSYL-PK-NDDTVVLVDENEEEFATKYLIDKNG----LSGGWRGFSIAHNLLEGDFLVFQLIQPCKF--KVY 175 8999********************4.33.4459***********889998....***********************98888..888 PP EE-S CS B3 96 vfrk 99 ++r+ XP_016475708.1 176 IIRE 179 8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	8.63E-24	83	180	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.7E-20	83	180	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.62E-26	87	178	No hit	No description
PROSITE profile	PS50863	12.21	89	180	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-16	89	179	IPR003340	B3 DNA binding domain
SMART	SM01019	6.9E-22	89	180	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MAISAMNSSK KSPLLSSSKK RVLEIKEKLL RKRALGPSKT NKVKNGDTKK LRICPEKKTY 60 KTSTVDANSS AMLRAEEVQA NLPSHFPSFV KYMLHSHVSR GFWLSFPRKF CDSYLPKNDD 120 TVVLVDENEE EFATKYLIDK NGLSGGWRGF SIAHNLLEGD FLVFQLIQPC KFKVYIIREN 180 NLTEIDGAIS LLNLDFHARP IKSDQSEDMK ICEAKEQKYL EPPVHQDVKQ EEAILIPDSD 240 QGPASDQCGS DSDNGSEVLS IRFSESRLEF KDVKDFSGFN ILVDGLIIDA EIPAHIRTKY 300 YYLCCTQKSF LHEHLLGGLN CKLAAGMITE TVNIADAIRA SKISIPRDFL ETWDNTLKGF 360 ECLGMEVGFL RARLGKLINM SCESDSILLS KRVELAEAKE EMRNLEEKVL KVKQVIQKLD 420 SEIEALTLKD TSFELKFKAL AAAPW

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MAISAMNSSK KSPLLSSSKK RVLEIKEKLL RKRALGPSKT NKVKNGDTKK LRICPEKKTY  60
KTSTVDANSS AMLRAEEVQA NLPSHFPSFV KYMLHSHVSR GFWLSFPRKF CDSYLPKNDD  120
TVVLVDENEE EFATKYLIDK NGLSGGWRGF SIAHNLLEGD FLVFQLIQPC KFKVYIIREN  180
NLTEIDGAIS LLNLDFHARP IKSDQSEDMK ICEAKEQKYL EPPVHQDVKQ EEAILIPDSD  240
QGPASDQCGS DSDNGSEVLS IRFSESRLEF KDVKDFSGFN ILVDGLIIDA EIPAHIRTKY  300
YYLCCTQKSF LHEHLLGGLN CKLAAGMITE TVNIADAIRA SKISIPRDFL ETWDNTLKGF  360
ECLGMEVGFL RARLGKLINM SCESDSILLS KRVELAEAKE EMRNLEEKVL KVKQVIQKLD  420
SEIEALTLKD TSFELKFKAL AAAPW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016475708.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A1S4AGZ8	0.0	A0A1S4AGZ8_TOBAC; B3 domain-containing protein Os01g0234100-like
STRING	XP_009612763.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-39	B3 family protein