PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 583aa MW: 65246.8 Da PI: 7.0402

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016475625.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	422.6	3.3e-129	214	582	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + lL++cA+a+++++l +l+a+ ++ s +gdp+qRl ay++e+L ar s++++y+al+++e + + l+++++++e++P+lkf+++ XP_016475625.1 214 KPLLIACARALTENKLDDFGSLIAKARNAISITGDPIQRLGAYIVEGLVARKEASGTNIYRALRCKEPA---GRDLLSYMHILYEICPYLKFGYM 305 568***************************************************************9...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + + l +g+rL+++ e++++p+ef++ v ++ XP_016475625.1 306 AANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLAFVGKRLTDISEKFNIPVEFHA-VPVFAPEV 399 **************************************************999999***********************.6888999 PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 + ++L+v+pgEalaVn+ l lh+++desv+++++rde+L++vkslsPkvv++veqe+++n+++F+ rfleal+yy a+f+s++++l r+ +eri+ XP_016475625.1 400 TRDMLDVRPGEALAVNFPLVLHHTPDESVDVTNPRDELLRMVKSLSPKVVTLVEQESNTNTAPFFPRFLEALDYYCAMFESIDVTLERDRKERIN 494 ********************************************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 vE+++l+r+ivnv+aceg+er+erhe l+kW+ r+++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWkdr+L+s+SaW XP_016475625.1 495 VEQHCLARDIVNVIACEGKERVERHELLGKWKLRFTMAGFRQYPLSSYVNSVIKSLLRCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 582 *****************************************************9999.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.39	187	564	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-126	214	582	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MESHHLYGYG VTGANLSYSY SKAATTTPLP NRLLGTLKFE SRNSPNSPFA NYFDPDTPTT 60 LSDSLEQHRS TENISETSPS NSSLDYNHYF HRPSPSPNFR PNTLLVRSGE TSLLQYANHS 120 QNMKNALLQL ETALMGPEEE ATTSSPSAGD IKQPQTSGQR SRMWNQEDQI SRRIERQPSH 180 VSTFGISSSG IHSEKRHKAT EDLSLSGIPS GNLKPLLIAC ARALTENKLD DFGSLIAKAR 240 NAISITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGRDLLSYM HILYEICPYL 300 KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWMTLLQA LAARPSGAPH VRITGIDDPV 360 SKYARGDGLA FVGKRLTDIS EKFNIPVEFH AVPVFAPEVT RDMLDVRPGE ALAVNFPLVL 420 HHTPDESVDV TNPRDELLRM VKSLSPKVVT LVEQESNTNT APFFPRFLEA LDYYCAMFES 480 IDVTLERDRK ERINVEQHCL ARDIVNVIAC EGKERVERHE LLGKWKLRFT MAGFRQYPLS 540 SYVNSVIKSL LRCYSEHYTL VEKDGAMLLG WKDRNLISAS AWH

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MESHHLYGYG VTGANLSYSY SKAATTTPLP NRLLGTLKFE SRNSPNSPFA NYFDPDTPTT  60
LSDSLEQHRS TENISETSPS NSSLDYNHYF HRPSPSPNFR PNTLLVRSGE TSLLQYANHS  120
QNMKNALLQL ETALMGPEEE ATTSSPSAGD IKQPQTSGQR SRMWNQEDQI SRRIERQPSH  180
VSTFGISSSG IHSEKRHKAT EDLSLSGIPS GNLKPLLIAC ARALTENKLD DFGSLIAKAR  240
NAISITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGRDLLSYM HILYEICPYL  300
KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWMTLLQA LAARPSGAPH VRITGIDDPV  360
SKYARGDGLA FVGKRLTDIS EKFNIPVEFH AVPVFAPEVT RDMLDVRPGE ALAVNFPLVL  420
HHTPDESVDV TNPRDELLRM VKSLSPKVVT LVEQESNTNT APFFPRFLEA LDYYCAMFES  480
IDVTLERDRK ERINVEQHCL ARDIVNVIAC EGKERVERHE LLGKWKLRFT MAGFRQYPLS  540
SYVNSVIKSL LRCYSEHYTL VEKDGAMLLG WKDRNLISAS AWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-63	217	583	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788119.1	0.0	PREDICTED: scarecrow-like protein 21
Refseq	XP_009788120.1	0.0	PREDICTED: scarecrow-like protein 21
Refseq	XP_016475625.1	0.0	PREDICTED: scarecrow-like protein 21
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A1S4AG00	0.0	A0A1S4AG00_TOBAC; scarecrow-like protein 21
TrEMBL	A0A1U7XNQ0	0.0	A0A1U7XNQ0_NICSY; scarecrow-like protein 21
STRING	XP_009788119.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3441	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]