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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_016475573.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
M-type_MADS |
| Protein Properties |
Length: 303aa MW: 34450 Da PI: 10.6346 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016475573.1 | genome | NCBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 61.9 | 7.5e-20 | 18 | 63 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
+ +sn vtfskRr g++KK +EL++LCd+e+a+iifs+ k++ +
XP_016475573.1 18 SKESNLLVTFSKRRSGLFKKTSELCTLCDVEIAIIIFSPGHKVFSF 63
6678999********************************9999877 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MARKMSKGRQ KIEMTKMSKE SNLLVTFSKR RSGLFKKTSE LCTLCDVEIA IIIFSPGHKV 60
FSFGHPNVES IIDCFLTRNI PSSTTANSSS TTCQLVEAHR NANVRELNKQ LLEILNQLEF 120
EKKREVEIVK INKAKIGKNW WERTVNELGH AELEQLKLGM EELKGLTRLY RRIFGRLGFA 180
HHKRDTEVAN AGKSRGNLRE RDMEVANAKK AEWLRSRRPL QMRGAKALQG EIFVIYGKII 240
FTSCAKLEAA DSGMIAPAVG LRRCDGRRSD KGVADVRIVL GEEDRRRGYL GAYAMPQVQS 300
WRV
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3kov_A | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
| 3kov_B | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
| 3kov_I | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
| 3kov_J | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
| 3p57_A | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
| 3p57_B | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
| 3p57_C | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
| 3p57_D | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
| 3p57_I | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
| 3p57_J | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
| 5f28_A | 1e-14 | 8 | 89 | 2 | 83 | MEF2C |
| 5f28_B | 1e-14 | 8 | 89 | 2 | 83 | MEF2C |
| 5f28_C | 1e-14 | 8 | 89 | 2 | 83 | MEF2C |
| 5f28_D | 1e-14 | 8 | 89 | 2 | 83 | MEF2C |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
| Publications
? help Back to Top |
- Xu W, et al.
Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
Plant Cell, 2016. 28(6): p. 1343-60
[PMID:27233529] - Figueiredo DD,Batista RA,Roszak PJ,Köhler C
Auxin production couples endosperm development to fertilization.
Nat Plants, 2015. 1: p. 15184
[PMID:27251719] - Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
Auxin production in the endosperm drives seed coat development in Arabidopsis.
Elife, 2017.
[PMID:27848912] - Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
Plant Signal Behav, 2017. 12(8): p. e1339000
[PMID:28613109] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
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