PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475565.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 529aa    MW: 60362.4 Da    PI: 8.8763
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475565.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016461483123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kCp C++ F++   L  H r+H
  XP_016475565.1 461 HKCPFCPRIFKSGQALGGHKRSH 483
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-5737No hitNo description
SMARTSM003550.19931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91936IPR007087Zinc finger, C2H2
PfamPF139124.2E-7932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.2394116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.84794121IPR007087Zinc finger, C2H2
PfamPF139129.2E-796118IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SMARTSM0035512375397IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39375402IPR007087Zinc finger, C2H2
PfamPF139121.1E-7375399IPR007087Zinc finger, C2H2
PROSITE patternPS000280377397IPR007087Zinc finger, C2H2
SMARTSM003550.031461483IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-7461483IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974461483IPR007087Zinc finger, C2H2
PROSITE patternPS000280463483IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEEDQDMKFV CKLCNKRYPC GKSLGGHMRS HEFEENFEAK LKKVQSWSTI NGKNFKRENQ  60
SKFELGGVSS YGLRENPKKT WRAEDSNSPL PQEKVCQQCG KVFQSMKALC GHMACHSEKD  120
KGGLNLKDDN SWSSESNSDT EADELLSPKC RSKAKRYKKI IVKSSICKVN NNYNCSSSVS  180
EIDHEQEQEE VAKCLMMLSR DSGIWNGVNS VVESSDNNSI VLETKSSSND MRNARNNSLK  240
CVYNQGEQPR TKKKEDRNLK CDMLDTETQS ENSDSDYFLG ENGKVDSDGS VERFRGNGNC  300
KWSTSKVSLG AWLDERRNDE KKSLNRIKRY LTESRKDLSK KYEHGGYGSA SNFDKCESRK  360
GITDRHKKIH KKRKYECLNC KKNFSSYQAL GGHRPCHRKT NDYPESRYET GENSLGADND  420
TKCINISKHK ETYSNKKPAV STQDVPYEPE KKVKPKKSKG HKCPFCPRIF KSGQALGGHK  480
RSHFIHARVS EENFNQSSAV KREVADLLDL NLPAPVDDED DEHARFMSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761680.10.0PREDICTED: zinc finger protein 655-like
RefseqXP_016475565.10.0PREDICTED: zinc finger protein 655-like
TrEMBLA0A1S4AFU30.0A0A1S4AFU3_TOBAC; zinc finger protein 655-like
TrEMBLA0A1U7VIL20.0A0A1U7VIL2_NICSY; zinc finger protein 655-like
STRINGXP_009761680.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-55C2H2-like zinc finger protein