PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016475478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 49568.2 Da PI: 6.0238 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.3 | 2.8e-08 | 275 | 322 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_016475478.1 275 AHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 322 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.15E-16 | 269 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.20E-9 | 269 | 326 | No hit | No description |
PROSITE profile | PS50888 | 15.25 | 271 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 271 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-5 | 275 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-8 | 277 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MDKKNMFLNN VNTMNELNCF YNPSWENDPF ESTLSSIVSS PVTSNIMPSN SNNSSGDNFV 60 LRELIGKLGN ICNSGEISPN SYVNSTNNSC YTTPLNSPPR LNLSNFDHQI NGNLQLLGVN 120 HLPNSTNLAH FSVDSEYVNR NVQNLESGKL SRVSSSKCIN VSGSQLGVQE FKESEFGESM 180 ENSSVSEQIP LGNDANSKKR KSAPKKKAKE TIAKNANVST ENNESSAKRS KSDEKNGSDI 240 DAAETKEQNK DNPKTAEPPK DYIHVRARRG QATDAHSLAE RVRREKIGER MKFLQDLVPG 300 CNKVTGKAVM LDEIINYVQS LQCQVEFLSM KLSNMNPRMD FNTESLISKN MFQSAESLQH 360 NLHPSETSTA FPYEFQSQHC PNGYMARNVN IMQLPHMEEF VEQTPQVPTF FEDDLHSVIQ 420 MGFGQIQAQN FPGNMPSAQM KVEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 209 | PKKKAKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 6e-39 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612948.1 | 0.0 | PREDICTED: transcription factor bHLH77-like | ||||
Refseq | XP_016475478.1 | 0.0 | PREDICTED: transcription factor bHLH77-like | ||||
TrEMBL | A0A1S4AGC8 | 0.0 | A0A1S4AGC8_TOBAC; transcription factor bHLH77-like | ||||
STRING | XP_009612948.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 7e-81 | bHLH family protein |