PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016475302.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 277aa MW: 31211.5 Da PI: 9.8592

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016475302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	93.2	2.3e-29	95	146	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 rY+eClkNh as+Ggh++DGCgEfmpse+ alkCaAC+CHRnFHRre+ + XP_016475302.1 95 RRYRECLKNHVASMGGHVLDGCGEFMPSEE----EGALKCAACNCHRNFHRRETFS 146 58***********************944....46**************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	9.1E-26	96	144	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-26	96	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-18	96	157	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.751	97	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	7.39E-19	203	274	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-29	204	275	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.762	211	275	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	3.3E-27	213	270	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGIPNSIGYN PSSSFSDTRR NEKAGSGNVI LSPIQTLNQH NQHSLQGHSQ LNSHQLEEER 60 DPLVAATNRA QLRQQSTTSG NGTTTTTTSS SSVVRRYREC LKNHVASMGG HVLDGCGEFM 120 PSEEEGALKC AACNCHRNFH RRETFSEAET QIARPRPPYS TFNPPIHSSS NYHHNYSTAS 180 PVMMTFGRNA ESSSEHLNLF NSNAGGGQSS KSKKRFRTKF TAEQKERMHE FAEKVGWSIQ 240 KQDEQELQHF CNQVGVKRQV FRIWMHNSKQ ANKKRQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-20	214	269	18	73	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016475302.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBL	A0A1S4AF53	0.0	A0A1S4AF53_TOBAC; zinc-finger homeodomain protein 2-like
STRING	XP_009592418.1	1e-124	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	2e-45	homeobox protein 24