PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475254.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 469aa    MW: 51547.4 Da    PI: 8.5672
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475254.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17165214155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_016475254.1 165 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 214
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-9165214IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16165223IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-17166222IPR001471AP2/ERF domain
PROSITE profilePS5103217.794166222IPR001471AP2/ERF domain
CDDcd000181.58E-11166224No hitNo description
SMARTSM003802.8E-32166228IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-6257301IPR016177DNA-binding domain
CDDcd000182.34E-13257302No hitNo description
SMARTSM003801.5E-12258306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MLDLNVSAVS VNSNSDETDP NNNTLFFKDE YSAGTSNTTA SSSVVNAPVA GDEDSNSSSV  60
HHGSKRAHHS LSTLNFSILK SDRAIEIEDD MSTDDVLTRQ LFPVKNESQV QVQVQGTRIQ  120
GQSQCWLNLS VPESGGGAEM GINKPPTPAQ QPVKKSRRGP RSRSSQYRGV TFYRRTGRWE  180
SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNITDYEEDM EQMKNLSKEE  240
FVQVLRRQST GFSRGNSKYR GVTLHKCGRW EARMGQFLGK KAYDKAAIKC NGREAVTNFE  300
PSTYEREIKE DNKDGGSGQN LDLNLWISPP LAGPKRDEIG RNVPFNFGAR EMVIGRRLEI  360
ENSSTAPQGA PTASKLSLLT GVYPGFSPHN MEGAMAKVEA TSSPGFPNWA WKIHSQGLVT  420
PVPVFSSAAS SGFSTTTTLY PNTLLLPSNQ LRLPTNSTFQ HPPVTLNIS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475254.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK033e-92RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S4AF570.0A0A1S4AF57_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X1
STRINGXP_009772737.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.26e-90related to AP2.7