PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016475122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 449aa MW: 51099.1 Da PI: 7.352 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.9 | 2.4e-10 | 26 | 103 | 15 | 98 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++p +fa+++ ++ ++ + le +sg++Wev++ + g++ l+ GW++F + + g f++F ++ rs f +v+vf+ XP_016475122.1 26 AQRIPEDFASRYCKNMLNP--VYLEVPSGEVWEVEV--VHSEGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVTVFD 103 4589********5454444..***************..999999**************************999999..888887 PP | |||||||
2 | B3 | 57.7 | 2.2e-18 | 226 | 310 | 4 | 91 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 + ps+v++ ++l++p kfa+++ +++++ +l+l+ + + W+vk+ + + g +t GWk Fv +n+Lk+gD++v++++++ + XP_016475122.1 226 FMHPSYVTRPHNLSIPLKFARKYFMQNRG--KLVLRVPGSGFWTVKC--TLRTGNAKITCGWKAFVLDNKLKSGDVCVLEVIKDtKLLL 310 5789*******************777555..7***************..666666779**********************998744443 PP | |||||||
3 | B3 | 47.4 | 3.6e-15 | 355 | 442 | 4 | 96 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + ps+v+ + l++++ a+++ +++ +++l+ ++ rsW +++++ k gr l +GWk+Fv++n +k gD++vF+ ++r++ ++v + XP_016475122.1 355 PMQPSYVSGPS-LTISRVIASKFF--PTRYSDVVLQVPNKRSWALNCTVGTKNGR--LNSGWKKFVQDNSIKIGDVCVFEQVSRTKLLFNVYI 442 56677777776.999999998886..345559***************77555555..***********************6665555555555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.616 | 12 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0018 | 13 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-14 | 16 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.58E-8 | 20 | 103 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-14 | 25 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-24 | 215 | 317 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-22 | 216 | 316 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.49E-18 | 221 | 317 | No hit | No description |
SMART | SM01019 | 9.7E-14 | 222 | 319 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.52 | 223 | 319 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-16 | 225 | 308 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-23 | 344 | 443 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-20 | 345 | 443 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.13E-18 | 350 | 444 | No hit | No description |
PROSITE profile | PS50863 | 12.111 | 351 | 446 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-11 | 352 | 446 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-13 | 356 | 443 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 449 aa Download sequence Send to blast |
MYCQLYRSAT VLIQRCMKLS AYFLSAQRIP EDFASRYCKN MLNPVYLEVP SGEVWEVEVV 60 HSEGQICLGI GWQDFSDFYS ISCGHFLMFG YNARSHFNVT VFDLSASEIE YPTKEIESDD 120 SIDISDVVEH SVENLSHGPL GQERKRKRQE RESEDDIPVN VQTKVIEEEE SQGNVVSLER 180 SEGCREQEQQ SNIITSKSDT ERDEERAENY QRAKAFKSKN PFIISFMHPS YVTRPHNLSI 240 PLKFARKYFM QNRGKLVLRV PGSGFWTVKC TLRTGNAKIT CGWKAFVLDN KLKSGDVCVL 300 EVIKDTKLLL IDVTIFRGVS DSTNESINPE PSVPCSPAYQ RAKAFTSENP FFIYPMQPSY 360 VSGPSLTISR VIASKFFPTR YSDVVLQVPN KRSWALNCTV GTKNGRLNSG WKKFVQDNSI 420 KIGDVCVFEQ VSRTKLLFNV YIFPAVEGV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-16 | 195 | 317 | 21 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-16 | 195 | 317 | 21 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC215404 | 2e-38 | AC215404.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0163K16, complete sequence. | |||
GenBank | HG975514 | 2e-38 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016475122.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A1S4AEL8 | 0.0 | A0A1S4AEL8_TOBAC; B3 domain-containing transcription factor VRN1-like | ||||
STRING | XP_009774258.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49480.1 | 3e-19 | related to vernalization1 1 |