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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016474570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 767aa MW: 87118 Da PI: 5.968 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 378.2 | 1e-115 | 394 | 765 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d + a++lL++++ ++sp gd +qRla++f+ +++arla+++s++ykal ++ts ++ l+a++l+ sP+ k+s XP_016474570.1 394 LRTLLINCAQAVAADDCRSATELLKQIRLHSSPFGDGNQRLAHCFADGMEARLAGTGSQIYKALVNKKTS---AADFLKAYHLYLASSPFRKLSD 485 6789************************************************************999999...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++ N++I+ + ++ rvH+iDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe+++ +ak++e+ XP_016474570.1 486 FASNKTIMTKAGNAARVHVIDFGILYGFQWPTLIQRIAAREGGPPKLRITGIEFPQPGfrPAERIEETGRRLADYAQTFNVPFEYHA-IAKKWET 579 *********************************************************9*****************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L+++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++ + ++++ F++rf e l ++salfd+lea++pres er+ XP_016474570.1 580 IRLEDLKLEKDEFLVVNCLYRFKNLPDETVLTDSSRTLVLDLIRKINPDIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDMLEANVPRESPERM 674 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Ere++gre+ nv+aceg er+er et+++W+ r +a F ++p++ ++++ a + + + + ++e++++l+lgWk+r+++++S+W+ XP_016474570.1 675 LIEREIFGREALNVIACEGWERVERPETYKQWQVRNLRARFMQIPFEREVMNRATEKVTSSYHKDFVLDENNKWLLLGWKGRTIYALSCWK 765 ***********************************************************999888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.668 | 368 | 745 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-113 | 394 | 765 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 767 aa Download sequence Send to blast |
MDPRFNNFPT SMNGFSLENQ SVHISSNRWK NNEPRFEAIY QDQKLVNGPR FENNFVPKNI 60 GGIQSVSNDP LPTSNIALTS DIGAEDEYNE DFDFSDTVLS YINQMLMEED VEDKTHMLQE 120 SLEFQAKEKS FYEALGKEYP PSPQQNLSIT YQNGEIPNEY CSGSLYNFTS NSNDSSDYLT 180 DPTVINISND LKSSYVQGLS VCNGTYSSIS SSSSINNIVD GFLDSPVSPL HNPDIYNDSY 240 PIWNFRKGVE EANKFLPTNI KLLDNVDING LLPLEKRGES GCVAARVEKR DEGEVSPTEP 300 RGRKNPHRDD KDLLEEERSS KQAAVFTEST VRSEEFDIVL LHSLGNGKEA LEAYRESLKN 360 ARTKNTVQNG QSKGYNGGKG RGKKHSGKKE VVDLRTLLIN CAQAVAADDC RSATELLKQI 420 RLHSSPFGDG NQRLAHCFAD GMEARLAGTG SQIYKALVNK KTSAADFLKA YHLYLASSPF 480 RKLSDFASNK TIMTKAGNAA RVHVIDFGIL YGFQWPTLIQ RIAAREGGPP KLRITGIEFP 540 QPGFRPAERI EETGRRLADY AQTFNVPFEY HAIAKKWETI RLEDLKLEKD EFLVVNCLYR 600 FKNLPDETVL TDSSRTLVLD LIRKINPDIF IHGIVNGAYS APFFVTRFRE VLFHFSALFD 660 MLEANVPRES PERMLIEREI FGREALNVIA CEGWERVERP ETYKQWQVRN LRARFMQIPF 720 EREVMNRATE KVTSSYHKDF VLDENNKWLL LGWKGRTIYA LSCWKPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-50 | 400 | 766 | 25 | 380 | Protein SCARECROW |
5b3h_A | 6e-50 | 400 | 766 | 24 | 379 | Protein SCARECROW |
5b3h_D | 6e-50 | 400 | 766 | 24 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016474570.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1S4AD23 | 0.0 | A0A1S4AD23_TOBAC; scarecrow-like protein 9 | ||||
STRING | XP_009622916.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |