PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474565.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 311aa    MW: 34917.4 Da    PI: 4.7764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474565.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-164291255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR +iN++f+ Lr+l+P++    ++K + a+ L ++++YI+ Lq
  XP_016474565.1 42 RSKHSETEQRRRIKINERFQALRDLIPEN----DQKRDRASFLLEVIQYIQFLQ 91
                    899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1839115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-2239112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.6724090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-144291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.13E-164295No hitNo description
SMARTSM003538.0E-134696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVRTVKTHHE DDEEDDEEFS SRTPDGSSQK GKSNDRKGNS HRSKHSETEQ RRRIKINERF  60
QALRDLIPEN DQKRDRASFL LEVIQYIQFL QEKLQWYEGT HQGWSAEPSK LMPWRGTSGP  120
VEGFVEQSQI IRNGSTHEDN IVINPTLLTS AQNSVEPNLS AAALYTDDPH MEANEAVAFS  180
MPLQCNLFEN ASVQPSQLSP DAEHCTSQPQ SLYWPGKQDA IDSDVPSYGR NDQEEVKVDG  240
EEAGISNVYS QRLLSTLNQT LASMGVDLSQ ANVKVQLDIA KCPSSGTIAT TLISPDNYDH  300
ARKRLRTEGS M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7179882e-59AJ717988.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT21-4-270, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594724.10.0PREDICTED: transcription factor BIM2
RefseqXP_009594725.10.0PREDICTED: transcription factor BIM2
RefseqXP_009594726.10.0PREDICTED: transcription factor BIM2
RefseqXP_016474563.10.0PREDICTED: transcription factor BIM2-like
RefseqXP_016474564.10.0PREDICTED: transcription factor BIM2-like
RefseqXP_016474565.10.0PREDICTED: transcription factor BIM2-like
TrEMBLA0A1S4AD790.0A0A1S4AD79_TOBAC; transcription factor BIM2-like
STRINGXP_009594724.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-46BES1-interacting Myc-like protein 2