 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016474450.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
Whirly |
| Protein Properties |
Length: 263aa MW: 29295.1 Da PI: 9.3915 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016474450.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 215.9 | 4e-67 | 86 | 224 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95
s+yk+kaal+v+++ p+f+ ldsg++kl+r+G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l++k+sceffhdp ++ s+eGkvrk+l+
XP_016474450.1 86 SIYKGKAALTVDPRPPEFSPLDSGAFKLSREGFVLLQFAPAAGVRQYDWGRKQVFSLSVTEMGSLISLGAKDSCEFFHDPNKGRSDEGKVRKVLR 180
7********************************************************************************************** PP
Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
vePlpdGsG+f+nlsv+n+l++ +e++++Pv+kaefavl s+++
XP_016474450.1 181 VEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFN 224
****************************************9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006281 | Biological Process | DNA repair |
| GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0009507 | Cellular Component | chloroplast |
| GO:0009508 | Cellular Component | plastid chromosome |
| GO:0003697 | Molecular Function | single-stranded DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042162 | Molecular Function | telomeric DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 263 aa
Download sequence Send
to blast |
MLNLSLSPAG FGLNLQNPTK TSSPYPYHQP LSFSSSFYNI NPFNSNTKYS KALPRNLSLT 60
CRHSEYFEPQ QQQQGASTPK VYVGYSIYKG KAALTVDPRP PEFSPLDSGA FKLSREGFVL 120
LQFAPAAGVR QYDWGRKQVF SLSVTEMGSL ISLGAKDSCE FFHDPNKGRS DEGKVRKVLR 180
VEPLPDGSGH FFNLSVQNKL INLDENIYIP VTKAEFAVLV SAFNFVVPYL LGWHTAVNSF 240
KPEDASRSNN ANPRLGADLE WSR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 1e-129 | 62 | 261 | 12 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 1e-129 | 62 | 261 | 12 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 1e-129 | 62 | 261 | 12 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 1e-129 | 62 | 261 | 12 | 218 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF233342 | 0.0 | AF233342.1 Solanum tuberosum DNA-binding protein p24 mRNA, complete cds. |
