PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474450.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Whirly
Protein Properties Length: 263aa    MW: 29295.1 Da    PI: 9.3915
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474450.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly215.94e-67862241139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s+yk+kaal+v+++ p+f+ ldsg++kl+r+G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l++k+sceffhdp ++ s+eGkvrk+l+
  XP_016474450.1  86 SIYKGKAALTVDPRPPEFSPLDSGAFKLSREGFVLLQFAPAAGVRQYDWGRKQVFSLSVTEMGSLISLGAKDSCEFFHDPNKGRSDEGKVRKVLR 180
                     7********************************************************************************************** PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     vePlpdGsG+f+nlsv+n+l++ +e++++Pv+kaefavl s+++
  XP_016474450.1 181 VEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFN 224
                     ****************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.109.1E-8073246IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.33E-8079263IPR009044ssDNA-binding transcriptional regulator
PfamPF085364.6E-6287221IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0009507Cellular Componentchloroplast
GO:0009508Cellular Componentplastid chromosome
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLNLSLSPAG FGLNLQNPTK TSSPYPYHQP LSFSSSFYNI NPFNSNTKYS KALPRNLSLT  60
CRHSEYFEPQ QQQQGASTPK VYVGYSIYKG KAALTVDPRP PEFSPLDSGA FKLSREGFVL  120
LQFAPAAGVR QYDWGRKQVF SLSVTEMGSL ISLGAKDSCE FFHDPNKGRS DEGKVRKVLR  180
VEPLPDGSGH FFNLSVQNKL INLDENIYIP VTKAEFAVLV SAFNFVVPYL LGWHTAVNSF  240
KPEDASRSNN ANPRLGADLE WSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1296226112218p24: plant transcriptional regulator PBF-2
1l3a_B1e-1296226112218p24: plant transcriptional regulator PBF-2
1l3a_C1e-1296226112218p24: plant transcriptional regulator PBF-2
1l3a_D1e-1296226112218p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2333420.0AF233342.1 Solanum tuberosum DNA-binding protein p24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474450.10.0PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL851e-151WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A1S4ACQ80.0A0A1S4ACQ8_TOBAC; single-stranded DNA-binding protein WHY1, chloroplastic-like
STRINGXP_009599234.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-113ssDNA-binding transcriptional regulator