PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474194.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 312aa    MW: 35161.8 Da    PI: 7.7439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474194.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05192214123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C++C+++F+++  L +H   H
  XP_016474194.1 192 YQCGICHRMFKTSQALGSHKTIH 214
                     9******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.62E-5328No hitNo description
PROSITE profilePS5015710.242431IPR007087Zinc finger, C2H2
PfamPF139122.9E-6426IPR007087Zinc finger, C2H2
SMARTSM003550.074426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576678.85E-10190214No hitNo description
PfamPF139122.0E-4192215IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993192219IPR007087Zinc finger, C2H2
SMARTSM003550.051192214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SuperFamilySSF576678.85E-10243270No hitNo description
Gene3DG3DSA:3.30.160.608.3E-4245270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.18248270IPR007087Zinc finger, C2H2
PfamPF139123.0E-11248271IPR007087Zinc finger, C2H2
SMARTSM003550.063248270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEKHKCKLCS RKFLNGKALG GHMRSHLMAL PLPPKTPPLK QDSGGGRSHS TLSLCSSENE  60
QEEEEEEVLE QKGDDSLGNY GLRENPKRSF RMIDPEFLDG GYVVQDRESE TESTKKPTCR  120
RSNRSRKMVL TIPADEKNEE KMKEKSVDFE PLSLFSDSSS EEDIAMCLMM LSKDVWKSSQ  180
PSKLRSKHGK KYQCGICHRM FKTSQALGSH KTIHKIKNSN SSTCIEESEQ KPTKKLVSVK  240
NIMDQKLHEC PFCGKLFQSG QALGGHKRSH LIMSSSTTDL NMPAPMEDED FSQPDFSAIS  300
DADFQHQENG RG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759748.10.0PREDICTED: zinc finger protein ZAT1-like
RefseqXP_016474194.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S4AC520.0A0A1S4AC52_TOBAC; zinc finger protein ZAT1-like
TrEMBLA0A1U7V0150.0A0A1U7V015_NICSY; zinc finger protein ZAT1-like
STRINGXP_009759748.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.13e-35C2H2-like zinc finger protein