PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473897.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 461aa    MW: 51877.3 Da    PI: 4.6183
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34721632102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d++l+ +isw ++g+sfvv+d+ ef++ +Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk+ll++
  XP_016473897.1  72 FLSKTFDLVDDSSLDFIISWGSKGESFVVWDPVEFSRMILPKNFKHNNFSSFVRQLNTYGFRKVDADR---------WEFANEGFLRGKKHLLKN 157
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r++s
  XP_016473897.1 158 IQRRRS 163
                     ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.07E-3467161IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3668161IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-5668161IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3072161IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-177295IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-17110122IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340111135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-17123135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNPFDKNPNF RPPGSESATL PPHSITMDPE FAVFSEPPSS PFINLEAFSA GEEGLGVVQP  60
MECLHGTQIP PFLSKTFDLV DDSSLDFIIS WGSKGESFVV WDPVEFSRMI LPKNFKHNNF  120
SSFVRQLNTY GFRKVDADRW EFANEGFLRG KKHLLKNIQR RRSPQSHQAG SSSAEAGKGA  180
MDEIEKLRKE KSSMMQEVIE LQQQQRGTVQ QMEVVNEKLQ AAELRQKQMV SFLAKVFQNP  240
TFLARLRQMK EQGKITSPRT MRKFVKHQPH DQDRVESSIE GQIVKFMPDF QDLVTSFENP  300
DINLVVDQQL PETGFGAEAM LFKNQERVIE GALNFNPEDS HFEGRNVASP QLEVMPECFV  360
SFPEELAKEK NILGFSSPGI ESMVKEEEVW SMGFEASAGM SSTGIELWGS LSNYDVPDFG  420
VSAGLSDVLW DIDPLQEAGS SGVDKWPNDE SPFGQPKNDS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-236716615125Heat shock factor protein 1
5d5u_B4e-236716124129Heat shock factor protein 1
5d5v_B4e-236716124129Heat shock factor protein 1
5d5v_D4e-236716124129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473897.10.0PREDICTED: heat stress transcription factor A-3-like
TrEMBLA0A1S4AB660.0A0A1S4AB66_TOBAC; heat stress transcription factor A-3-like
STRINGXP_009621033.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-102heat shock transcription factor A3