PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016473877.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 456aa MW: 51371.6 Da PI: 5.6575

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016473877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	51	2.8e-16	267	311	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++F +++ dAAk+Lgv ++LKr CR y I RWP+ k XP_016473877.1 267 GISRSVLEEQFGKKLSDAAKSLGVARSTLKRMCRDYDIYRWPRSK 311 6999**************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.843	252	337	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	1.1E-4	253	303	IPR009057	Homeodomain-like
Pfam	PF02042	2.0E-13	268	311	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.85E-17	369	454	No hit	No description
SMART	SM00666	2.4E-15	372	455	IPR000270	PB1 domain
PROSITE profile	PS51745	18.234	372	456	IPR000270	PB1 domain
Pfam	PF00564	3.2E-15	373	454	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-15	374	453	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MMRRSIEIHS FLSKLLATIR EQLLSFFLDS GPSLFVEVIR IAPVDELDSF EISQLQQGVR 60 SKGNEKMVLF DSLNKDSADL GPSSSTDIGA HHMEIAKDTP DNGEETVLPD SAHKQGVEEA 120 DAMDKEKSSV HFILATSFAV SEKKLQQNLS TDKASLDEKL DSFEIGHRQL PSMVQYDTIN 180 QIFGFDPSSS SDLEEIITAD YGRDTQLNLQ SKKRGESTQP DLAHQQRVEE ADVGDKRRHS 240 VHVEENANSH NCPEKHKRIK RIEKEYGISR SVLEEQFGKK LSDAAKSLGV ARSTLKRMCR 300 DYDIYRWPRS KSANDVCSLS ENKPVKRVEN QTGNSSREDL QLPHAGLSNG MDTTTTLTQR 360 KKPTATFQSD NAMSVKVTYK DVTIRFPFSL SSGKIDLETE VEKRLKLVLI GSYSIKYEDE 420 DNDWIAITCD SDLEYGMHTL RSLGRTTMKM LVEPLN

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MMRRSIEIHS FLSKLLATIR EQLLSFFLDS GPSLFVEVIR IAPVDELDSF EISQLQQGVR  60
SKGNEKMVLF DSLNKDSADL GPSSSTDIGA HHMEIAKDTP DNGEETVLPD SAHKQGVEEA  120
DAMDKEKSSV HFILATSFAV SEKKLQQNLS TDKASLDEKL DSFEIGHRQL PSMVQYDTIN  180
QIFGFDPSSS SDLEEIITAD YGRDTQLNLQ SKKRGESTQP DLAHQQRVEE ADVGDKRRHS  240
VHVEENANSH NCPEKHKRIK RIEKEYGISR SVLEEQFGKK LSDAAKSLGV ARSTLKRMCR  300
DYDIYRWPRS KSANDVCSLS ENKPVKRVEN QTGNSSREDL QLPHAGLSNG MDTTTTLTQR  360
KKPTATFQSD NAMSVKVTYK DVTIRFPFSL SSGKIDLETE VEKRLKLVLI GSYSIKYEDE  420
DNDWIAITCD SDLEYGMHTL RSLGRTTMKM LVEPLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016473877.1	0.0	PREDICTED: protein NLP7-like
TrEMBL	A0A1S4AB46	0.0	A0A1S4AB46_TOBAC; protein NLP7-like
STRING	XP_009589173.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13981	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-13	NIN like protein 7