PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473751.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 467aa    MW: 52103.6 Da    PI: 6.594
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473751.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001788105219
                     EETTTTEEESSHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                     +C++Cgk Fs++ ++  H
  XP_016473751.1  88 VCENCGKEFSSWKSFLEH 105
                     6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-51840No hitNo description
PROSITE profilePS501578.61840IPR007087Zinc finger, C2H2
PfamPF139120.00481840IPR007087Zinc finger, C2H2
SMARTSM003556.11840IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-582106No hitNo description
SMARTSM0035518087107IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.25E-6230253No hitNo description
PfamPF139121.3E-9231255IPR007087Zinc finger, C2H2
SMARTSM003550.13231253IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076231258IPR007087Zinc finger, C2H2
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
SuperFamilySSF576671.25E-6293320No hitNo description
PfamPF139126.1E-13298321IPR007087Zinc finger, C2H2
SMARTSM003550.52298320IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328298320IPR007087Zinc finger, C2H2
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MACIDQEQQQ PPPPVFKHYC RVCKKGFVCG RALGGHMRAH GIGDEGANLD DDDPASDWED  60
KFGGSVKGGN KRMYQLRTNP NRQKSNRVCE NCGKEFSSWK SFLEHGKCSS EDVEESLVSS  120
PCSEGEEYIT NGERKGYGWS KRKRSLRTKV GTLSTSTYLS SEEDDLLLAK CLIDLANARV  180
DTSLAEPEES CASASKDEER ARNPMTYLTP LVTTRVPLDN KAKGASSKGL FECKACKKVF  240
NSHQALGGHR ASHKKVKGCY AAKQDQLDDS LIDDQDMNIT HDEFTLQASK SMRKSKIHEC  300
SICHRVFSTG QALGGHKRCH WITSNSPDSS KYNFHSHMEQ INLRSNLRKS GDALDLNIPS  360
HEDMSRVRRD PMNPLSFEVS TEIHLHPWNT KDNSSDNYYL EEIKNNNDDN NNNNNNSSAQ  420
NVEDDEADSK LKLAKLSELK DMNTSSENPS HWLQVGIGSA TEVGADS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473751.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A1S4AAX30.0A0A1S4AAX3_TOBAC; zinc finger protein ZAT4-like
STRINGXP_009594478.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-26C2H2-like zinc finger protein