PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473633.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 260aa    MW: 31351.5 Da    PI: 5.4557
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.84e-2535116185
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     +W  qe+++ + +r em++++ ++k++k lWe ++ km+e+g++rs++qCk+kw+nl +ryk ++++e +     ++++p++++l
  XP_016473633.1  35 QWNIQETKDFLMIRGEMDQNFMETKRNKLLWEVIATKMKEKGYNRSAEQCKCKWKNLVTRYKGCETTEAEA--L-RQQFPFYNEL 116
                     7********************************************************************95..3.4589***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.78E-233499No hitNo description
PfamPF138378.3E-2135117No hitNo description
PROSITE profilePS500906.9923692IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEGQPNLYNQ YQFISQQNLL NIDTSGVGVG DRFPQWNIQE TKDFLMIRGE MDQNFMETKR  60
NKLLWEVIAT KMKEKGYNRS AEQCKCKWKN LVTRYKGCET TEAEALRQQF PFYNELLAIF  120
MERMLRMEAE EEENDEDSEE EKGSNKKKRK LKGNTSSSRS SNVASGNLKE ILDEFMKKQM  180
ELEMQWQKEY ERREEERKIK EMEWRQTMEA LQNERLMMEK RWREREEQWK MREEARAEKR  240
NALITALLNK LRSEDTSAIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630607.10.0PREDICTED: trihelix transcription factor GT-3b-like
RefseqXP_016473633.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804504e-61TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A1S4AAG40.0A0A1S4AAG4_TOBAC; trihelix transcription factor GT-3b-like
STRINGXP_009630607.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-49Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]