PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Regulation |

Basic Information? help Back to Top

TF ID

XP_016473624.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 332aa MW: 37208.8 Da PI: 8.8567

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016473624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	379.1	7.2e-116	1	332	1	301
GAGA_bind 1 mdddgsre..rnkg....yyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 mdd+g++e r+k+ ++ ++ +s+k q+m+++aerda+i+ernlalsek+a++aerdma lqrd+a+aern a++erdn+ ++l+++e XP_016473624.1 1 MDDSGHHEngRHKPpqgqWFLQHqPSMK-----QIMAIMAERDAAIQERNLALSEKRATLAERDMAILQRDSAIAERNSAIMERDNATATLQYQE 90 8999998879998742233445556777.....************************************************************ PP GAGA_bind 89 nsla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk.ekkakkkkkksekskk 176 ns++ s +p+g+q+ ++ k++++ qq +++ pql++++++ ++++++e+ + aa+e ++++++k++++ak +kk++k+ kk +k+ + XP_016473624.1 91 NSMNsgnmSPCPPGCQIARELKHMHHPQQhVHHqPQLGEPTFNHSDMHMNESSIQSPAAPEPTKSRRNKRSKEAKLVTsSKKTSKPSKKVKKEGE 185 99999889****************964446*****9999998887766666666655555544444322202222233333333333 PP GAGA_bind 177 kvkkesader......................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249 + +k+ de+ +k+++k++dl+ln+vs+Dest+PvPvCsCtG+lr CYkWGnGGWqS+CCt ++S+yPLP+ ++ XP_016473624.1 186 DLNKSMLDESqewngaqemgggnddvnrqlgvTKTDWKDQDLGLNQVSFDESTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTNNLSMYPLPTLPN 280 3333333322456799*************************************************************************** PP GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +r+aRi+grKmS++af+klL++LaaeGydlsnpvDLkd WAkHGtn+++ti+ XP_016473624.1 281 KRHARIGGRKMSGSAFTKLLSRLAAEGYDLSNPVDLKDNWAKHGTNRYITIK 332 *************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	4.1E-101	1	332	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.5E-161	1	332	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDDSGHHENG RHKPPQGQWF LQHQPSMKQI MAIMAERDAA IQERNLALSE KRATLAERDM 60 AILQRDSAIA ERNSAIMERD NATATLQYQE NSMNSGNMSP CPPGCQIARE LKHMHHPQQH 120 VHHQPQLGEP TFNHSDMHMN ESSIQSPAAP EPTKSRRNKR SKEAKLVTSS KKTSKPSKKV 180 KKEGEDLNKS MLDESQEWNG AQEMGGGNDD VNRQLGVTKT DWKDQDLGLN QVSFDESTMP 240 VPVCSCTGVL RPCYKWGNGG WQSSCCTNNL SMYPLPTLPN KRHARIGGRK MSGSAFTKLL 300 SRLAAEGYDL SNPVDLKDNW AKHGTNRYIT IK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982302	0.0	FJ982302.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016473618.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_016473619.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_016473620.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_016473621.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_016473622.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_016473624.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_016473625.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_016473626.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_016473627.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	1e-136	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A1S4AAE8	0.0	A0A1S4AAE8_TOBAC; protein BASIC PENTACYSTEINE6-like
STRING	XP_009598116.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-131	basic pentacysteine 6