PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016473479.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 338aa MW: 37317.8 Da PI: 6.5027 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.1 | 5.9e-19 | 232 | 265 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C tkTp+WR gp g+ktLCnaCG++y+k + XP_016473479.1 232 CVHCEITKTPQWRAGPMGPKTLCNACGVRYKKGR 265 ********************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.6E-69 | 2 | 315 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.635 | 226 | 262 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.9E-17 | 226 | 276 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.33E-15 | 230 | 289 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-15 | 230 | 264 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.54E-14 | 231 | 278 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 232 | 257 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.6E-16 | 232 | 266 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
MGSSLVDEID CASFFDHMDD LIEFSPENEC GDLDSTDCKN FPSICNEPLP DSDPLFFSSH 60 RNSPSDFSSE LLVPYEDIVQ LEWLSTFVED SFSCGGLTMG KEHFPVNKEP SHNKFLSSSP 120 VSVLESSSSS SSSSGAVKTT PPLSPCHRGT QRARSKRPRP ATFNPRLVSQ LMSPTSSFTE 180 IHQQFVAPED TLESDFGESP MKKKKRIKFS IPLAPVDTNR NYQRAPQTVR KCVHCEITKT 240 PQWRAGPMGP KTLCNACGVR YKKGRLFPEY RPAAAPTFVP SLHSNSHKKV LEMRSNVFPE 300 DTHDKQAAPC SIRPLSPGPP ESNATAGTSI AQSDFNPE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 155 | 159 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802378.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_009802379.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_016473478.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_016473479.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
TrEMBL | A0A1S4AA63 | 0.0 | A0A1S4AA63_TOBAC; GATA transcription factor | ||||
TrEMBL | A0A1U7YT31 | 0.0 | A0A1U7YT31_NICSY; GATA transcription factor | ||||
STRING | XP_009802378.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32890.1 | 2e-42 | GATA transcription factor 9 |