PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 81aa MW: 8745.76 Da PI: 8.9667

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016473084.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.8e-09	8	55	2	46
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 g+WT+ + + +a + + ++ +W+ +a+ +g g+t+ ++k ++ XP_016473084.1 8 GSWTAKQNKAFEKALAVYDKDtpdRWSNVAKAVGGGKTAAEVKRHYEV 55 79*******************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.783	2	57	IPR017877	Myb-like domain
SMART	SM00717	7.3E-8	6	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-5	6	56	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.3E-12	8	65	IPR009057	Homeodomain-like
Pfam	PF00249	8.7E-7	8	54	IPR001005	SANT/Myb domain
CDD	cd00167	3.25E-6	9	57	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MSSSQAQGSW TAKQNKAFEK ALAVYDKDTP DRWSNVAKAV GGGKTAAEVK RHYEVLVHDI 60 MFIENGGVPF PIYTGGGTTN N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	8e-31	1	76	1	78	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016473084.1	5e-55	PREDICTED: protein RADIALIS-like 1
Swissprot	F4JVB8	6e-32	RADL1_ARATH; Protein RADIALIS-like 1
TrEMBL	A0A1S4A932	1e-53	A0A1S4A932_TOBAC; protein RADIALIS-like 1
STRING	XP_009618694.1	1e-36	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA202	24	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	4e-24	RAD-like 1

Publications ? help Back to Top
Zhang M, et al. ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development. Plant Physiol., 2013. 163(2): p. 713-20 [PMID:23922269]