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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016472938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 241aa MW: 27363.5 Da PI: 6.7857 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.5 | 1.6e-33 | 54 | 107 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k +YkeClkNhA+s+GghavDGCgEfmp+ ge+g+ ++lkCaAC+CHRnFHR+ + XP_016472938.1 54 KPKYKECLKNHAVSIGGHAVDGCGEFMPA-GEDGSLDSLKCAACNCHRNFHRKIT 107 679*************************9.999*******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-21 | 56 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.1E-31 | 56 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.0E-30 | 56 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.928 | 57 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-30 | 167 | 240 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.99E-18 | 168 | 239 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.859 | 176 | 240 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 3.5E-25 | 178 | 235 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDFENHQEEE ETEPPPRHDD SLDNSNSTHP TKMPSPTPME LEPLAVVHTW HNNKPKYKEC 60 LKNHAVSIGG HAVDGCGEFM PAGEDGSLDS LKCAACNCHR NFHRKITQPP PNAVEPLPFV 120 NYHSSYYRSL PPPCGYLQYH VAPQQRPLAL PSTSGGGGYW EDQEDMSNLN NSGGSGSKKR 180 FRTKFSQEQK EKMQELADKL GWRIQREDEE LVQQLCNETG VRRQVFKVWM HNNKNTLGKK 240 P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-23 | 177 | 236 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769511.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2-like isoform X2 | ||||
Refseq | XP_016472938.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | A2Z259 | 8e-65 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9SB61 | 1e-65 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A1S4A8H1 | 0.0 | A0A1S4A8H1_TOBAC; zinc-finger homeodomain protein 2-like | ||||
TrEMBL | A0A1U7VX16 | 0.0 | A0A1U7VX16_NICSY; zinc-finger homeodomain protein 2-like isoform X2 | ||||
STRING | XP_009769508.1 | 1e-173 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-63 | homeobox protein 22 |
Publications ? help Back to Top | |||
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