 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016472877.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
LBD |
| Protein Properties |
Length: 146aa MW: 16476.7 Da PI: 7.7657 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016472877.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 123 | 1.5e-38 | 5 | 105 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk lrr+C++dC++ pyfp ++p++f +vh+++Gasnv k+l++++e++r d++ +l+yeA +r++dPvyG+vg+++ l++++ ql++++a
XP_016472877.1 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSCVHRIYGASNVGKMLQQVQEHQRADVAGTLYYEAYCRIKDPVYGCVGIVTVLHEEIYQLQSQMA 99
6********************************************************************************************** PP
DUF260 96 llkeel 101
++++e+
XP_016472877.1 100 KVQAEI 105
*99875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 146 aa
Download sequence Send
to blast |
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSCVHRI YGASNVGKML QQVQEHQRAD 60
VAGTLYYEAY CRIKDPVYGC VGIVTVLHEE IYQLQSQMAK VQAEIDLHKA QSPVQGQQQV 120
EFSANSLADQ NGVYTSSPSL FDPSFH
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975440 | 9e-51 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
