PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016472724.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 300aa MW: 33755.7 Da PI: 6.8397

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016472724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.8	9.2e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ ++reda++sl+yeA+ r+rdPvyG+vg+i++lq++l+q++ +l XP_016472724.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEADYRLRDPVYGCVGLISALQHKLKQVQDDLL 101 7********************************************************************************************98 PP DUF260 96 llkee 100 +k+e XP_016472724.1 102 NAKKE 106 88876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.814	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-43	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNATQR 60 EDAVNSLAYE ADYRLRDPVY GCVGLISALQ HKLKQVQDDL LNAKKELATY IGPSAMLPIL 120 QHPGYIQQHP NNPSSSTMMP YNMQPMLGLP TGMQQQQHGA QLMLRDSQQQ QQQQQNQQQV 180 IEAHQLAAAM AARDQQEMLR TYEQQAQQQQ HPQFNSGFDS ADPATGFHQM NSSVSPSLAL 240 GSFDNSYQIQ QTQQEHCGQV QLQPHQLLQQ QQQQLPQQPQ TPQQQQRAKS EEERSIGPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-48	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-48	3	110	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016472724.1	0.0	PREDICTED: LOB domain-containing protein 36-like isoform X2
Swissprot	Q9FKZ3	7e-79	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1S4A814	0.0	A0A1S4A814_TOBAC; LOB domain-containing protein 36-like isoform X2
STRING	XP_009600699.1	1e-172	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-79	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]