PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016472694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 608aa MW: 68596.3 Da PI: 9.5939 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.6 | 1.1e-13 | 27 | 116 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ + ++s+rl++p +fa+++ ++ ++ + le +sg++Wev++ ++gr+ l+ GW++F + + gDf++F ++ rs f +v+ XP_016472694.1 27 FFKII--FSQHESSRLRIPEDFASRYCKNMLNP--VYLEVPSGEVWEVEV--VHSQGRICLGIGWQDFSDFYSISCGDFLMFGYNARSHF--NVT 113 55655..34556678***********5454444..***************..999999**************************999999..999 PP EE- CS B3 96 vfr 98 +f+ XP_016472694.1 114 IFD 116 987 PP | |||||||
2 | B3 | 44.8 | 2.3e-14 | 348 | 426 | 5 | 87 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ps+v+k +l ++ fa+++ ++e++ l+l+ +s sW+vk+ + +++ ++ +Wk Fv +n+Lk gD++vF+l++ XP_016472694.1 348 MQPSYVSKPYNLHISFLFARKYF-PEECG-NLVLRVPSRGSWTVKYVVGRSK--AEIRFCWKAFVLDNKLKFGDVCVFELIKG 426 67999****99***********7.33454.9***************555555..558999*******************9864 PP | |||||||
3 | B3 | 51 | 2.5e-16 | 511 | 598 | 5 | 95 |
-..-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + ps+v++ rl++ + a+++ ++ +++l+ +s +sW vk+i ++ lt+GWk+Fv +n+Lk+gD++vF++++rs+ ++ XP_016472694.1 511 MQPSYVSSAcgpMRLSITLSRARKFFAT--RHSDVVLQVSSKKSWAVKCIL--GPANAKLTSGWKDFVLDNNLKVGDVCVFERVSRSKL--LFN 598 4445555557667999999999999755..4558***************55..555566***********************7766555..444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.9E-20 | 19 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-19 | 21 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.80E-13 | 25 | 116 | No hit | No description |
PROSITE profile | PS50863 | 12.012 | 25 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-10 | 27 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.5E-10 | 28 | 118 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-19 | 336 | 427 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-19 | 337 | 427 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.7E-9 | 343 | 434 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 344 | 439 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.02E-16 | 348 | 427 | No hit | No description |
Pfam | PF02362 | 4.1E-12 | 348 | 426 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-22 | 499 | 602 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.09E-20 | 500 | 602 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.08E-16 | 505 | 602 | No hit | No description |
SMART | SM01019 | 4.7E-10 | 507 | 600 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.308 | 510 | 605 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-14 | 510 | 597 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MAAKPQLQRD EGSSHWKSST NITQPKFFKI IFSQHESSRL RIPEDFASRY CKNMLNPVYL 60 EVPSGEVWEV EVVHSQGRIC LGIGWQDFSD FYSISCGDFL MFGYNARSHF NVTIFDLSAS 120 EIEYPYSSVH GIHTPISYCH ETRHAPKRDQ SGSDDSVEIL EGIPRSQKAK AKIPDTVEHS 180 VENLGQCPLG QSSKRKRQKG DAEHDASVDM HVKRMKVEKL QEDVASPSFI REGQNHGEGT 240 EIEHSLEILD HCPSGHGSKR KGLEGDAEDD VSTDIHTRSI KVEKSRENVA SPSFTRKTKK 300 SGESCRMHKQ QSKLVSAKNK TVLEKKRSIA YQRARAFKSE NPFVIYFMQP SYVSKPYNLH 360 ISFLFARKYF PEECGNLVLR VPSRGSWTVK YVVGRSKAEI RFCWKAFVLD NKLKFGDVCV 420 FELIKGTKPI LDATIFPAAE SKAKHKIDGK LPDVSDCKNK IIKTENSEDA GKHVQQSKSS 480 CKGRVVAKEM VIAYQRAKAF KSENPFFVCF MQPSYVSSAC GPMRLSITLS RARKFFATRH 540 SDVVLQVSSK KSWAVKCILG PANAKLTSGW KDFVLDNNLK VGDVCVFERV SRSKLLFNVI 600 IYTSAEGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-15 | 316 | 606 | 18 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-15 | 316 | 606 | 18 | 144 | B3 domain-containing transcription factor VRN1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 194 | 215 | RKRQKGDAEHDASVDMHVKRMK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016472694.1 | 0.0 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X3 | ||||
TrEMBL | A0A1S4A7Y3 | 0.0 | A0A1S4A7Y3_TOBAC; B3 domain-containing protein LOC_Os12g40080-like isoform X3 | ||||
STRING | XP_009622351.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-19 | B3 family protein |