PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472170.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 694aa    MW: 75729.5 Da    PI: 6.3856
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like911e-28200253155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G ekA+Pk+il++m+v+gLt+e+v+SHLQkYRl
  XP_016472170.1 200 KPRVVWSIELHRKFVAAVNQL-GLEKAVPKRILDMMNVDGLTRENVASHLQKYRL 253
                     79*******************.********************************8 PP
2Response_reg78.81.8e-26181261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll  +l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a++++ ++ + +  G
  XP_016472170.1  18 VLAVDDDPICLKLLDGLLRKCQY-HVTTTSQARTALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDSRLVMKGITHG 110
                     799********************.***************999889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+  eel +
  XP_016472170.1 111 ACDYLVKPVRLEELKN 126
                     *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363928.3E-1651691IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.4E-4215149No hitNo description
SuperFamilySSF521721.42E-3515144IPR011006CheY-like superfamily
SMARTSM004485.4E-3216128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.18817132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.3E-2418126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.73E-2719132No hitNo description
SuperFamilySSF466891.42E-19197257IPR009057Homeodomain-like
PROSITE profilePS5129411.91197256IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-30197258IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-24200253IPR006447Myb domain, plants
PfamPF002496.0E-7202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MTVEERENND NFPVGMRVLA VDDDPICLKL LDGLLRKCQY HVTTTSQART ALKMLRENRD  60
RFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANSDS RLVMKGITHG ACDYLVKPVR  120
LEELKNIWQH VIRKKKVEPK NHIKSDDQDK ANQGGGEGGK GPQLSGNSDQ NGKLNKKRKD  180
EEYESDENGN DDDDPTTQKK PRVVWSIELH RKFVAAVNQL GLEKAVPKRI LDMMNVDGLT  240
RENVASHLQK YRLYLKRISS EATQQANMVA ALGGKDSAYM RMGSLDGLGG FRTLAGSGRY  300
GQASLSSSYA SGGMLGRLNS PAGVSLRSLA SSPLLQPNHG QSLSNSMNSF TKLNPNVPPV  360
SQNASLFHGI PASLELDQLQ QSKRAIHMGE LNPLDEHGLL TAASSTFTDS RSVVGNSNSS  420
LSNVLNNPIL LQVNSQQPLT GGGFGNQPSL NVASFSSDAF NTGVSGSSNF LDHSRYTENC  480
QNSIQPVKFQ SSSFPLTEPF SNSHLPQDRV RENSTSAGPH LQNSTVDFSS STIVSLPFEA  540
SRGETQCLES LGGGVQIMNQ VHCQRWPDQN QHYSQNSNHI FGNMSSQVSS NGGVASLPHS  600
MDQNNEVVYR GVDVSLIGRS NGGSSALIQH SPDSRMRTNE DYLLETTKQQ VGFLPQGYGS  660
LDDLMSAMKR EQQDGAMLEG GEFGFDAYSF GSGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-26196259164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757804.10.0PREDICTED: two-component response regulator ARR12-like
RefseqXP_016472170.10.0PREDICTED: two-component response regulator ORR24-like
TrEMBLA0A1S4A6C40.0A0A1S4A6C4_TOBAC; Two-component response regulator
TrEMBLA0A1U7V6D80.0A0A1U7V6D8_NICSY; Two-component response regulator
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-128response regulator 12