PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016471157.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 442aa    MW: 48870 Da    PI: 8.6523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016471157.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.5e-16232278455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  XP_016471157.1 232 VHNQSERRRRDRINQKMKALQRLVPNA-----SKTDKASMLDEVINYLKQLQ 278
                     6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.752228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-19231301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-13232278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-16233282No hitNo description
Gene3DG3DSA:4.10.280.104.4E-18233291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-17234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSHCTVPTWN PRHQRQEQAV EAEEPNKYPH VHNQQNQINH FMPMSKCEKV AELTWENRHG  60
VGGILSMSQT KPTLGRAGDT LESIVHQATY HGQINQTSIQ NYDQNQNLKI GMCVGKWGES  120
SQHQMAAPPG GATVLAKKRM RSESDPKYGG KLVGEDEYAE LSACASASAT FCRENDTNMV  180
TWPSFDESSR SIKSKTSCDE DSACHDGGSE NKEEEHETKR SNSSRRSRAA VVHNQSERRR  240
RDRINQKMKA LQRLVPNASK TDKASMLDEV INYLKQLQAQ VQLMNSVRNM APQMMMPLGM  300
HQHIQMSLLA RMGMGVGLGM GMGMFDMTAL ARAAAAAAHQ SLTTHPLIHT NPIANPTNPF  360
IPPAFAMPAA PAIPSAAQAN TVGRATTAVT PPPYSAFPTQ PMDMEYFNNM AALYRQQANN  420
HSTQTTGYKL NQGNLNIQGQ RE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754423e-81HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016471157.10.0PREDICTED: transcription factor UNE10-like isoform X1
TrEMBLA0A1S4A3990.0A0A1S4A399_TOBAC; transcription factor UNE10-like isoform X1
STRINGXP_009771453.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-35bHLH family protein