PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016471015.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 394aa    MW: 44295.4 Da    PI: 7.6945
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016471015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.91.7e-35501931128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                     lp+G++F+Ptd+el+ e+L++kv +kk       +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++    
  XP_016471015.1  50 LPAGVKFDPTDQELI-EHLEAKVVSKKeskshplI---DefipTIEGEdGICYTHPERLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecd 139
                     799************.9999999888856665443...143334766646**********.555666799******************7333455 PP

             NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_016471015.1 140 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193
                     5544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575116No hitNo description
SuperFamilySSF1019414.32E-3946212IPR003441NAC domain
PROSITE profilePS5100533.47850212IPR003441NAC domain
PfamPF023653.8E-1651193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MNKSSSSHQL GSISSCDLID AKLEEHQLCG SKQCPGCGQK LEGKPDWVGL PAGVKFDPTD  60
QELIEHLEAK VVSKKESKSH PLIDEFIPTI EGEDGICYTH PERLPGVTRD GLSRHFFHRP  120
SKAYTTGTRK RRKIQTECDL QGGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK  180
PEKTNWVMHQ YHLGQNEEER EGELVVSKIF YQTQPRQCNT TSWSNNERSI NTGDHSGSGS  240
CSSSKEINTV NPISHSHRDE LSAAVGAAMS SNYNTVNIQR LKADHFSFLP FRRNFDEAGI  300
MDAETSMARR DDQAVGTCEE PESQRQHPHH VTHESSHQHQ HQNQIATTTA FNISRPSPPI  360
SAIIAPPPPL HHTSVILDHD SFHVPTNYNF QVLF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754442e-97HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755172e-97HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595153.10.0PREDICTED: NAC domain-containing protein 101-like isoform X2
RefseqXP_016471015.10.0PREDICTED: NAC domain-containing protein 101-like isoform X2
SwissprotQ9M0F81e-151NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1S4A3250.0A0A1S4A325_TOBAC; NAC domain-containing protein 101-like isoform X2
STRINGXP_009595150.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-136NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]