PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016470842.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 209aa MW: 24130.6 Da PI: 8.043

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016470842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87	2.9e-27	44	132	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YAk+vGF +r+++ ++s+ +++i +r++ C+k+g+ + k++ r+tr++tr gCka++ vk +k++kw+vt++++eH+H+l XP_016470842.1 44 FYDDYAKRVGFIMRIDQCRRSEVDKRILSRRLSCNKQGYYVKMKNHYGPPRKTRTSTREGCKAMMLVKVNKSDKWVVTRFVKEHTHPLI 132 9*****************************************999**************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-25	44	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MNLETGAATI DCSAESQLVA CEDNVVREPF IGMEFESEDA AKGFYDDYAK RVGFIMRIDQ 60 CRRSEVDKRI LSRRLSCNKQ GYYVKMKNHY GPPRKTRTST REGCKAMMLV KVNKSDKWVV 120 TRFVKEHTHP LIASGCSSRN AMDKKDRRIL ELSAELEHQD KLCDLYREQL ITFLENVEQQ 180 MELLSKKIEV AVNNVKEIEA EVQKPSNNQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-145	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016470835.1	1e-156	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016470842.1	1e-156	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S4A2C9	1e-155	A0A1S4A2C9_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009779434.1	1e-155	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-67	FAR1 family protein