PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016470835.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 209aa MW: 24130.6 Da PI: 8.043 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87 | 2.9e-27 | 44 | 132 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YAk+vGF +r+++ ++s+ +++i +r++ C+k+g+ + k++ r+tr++tr gCka++ vk +k++kw+vt++++eH+H+l XP_016470835.1 44 FYDDYAKRVGFIMRIDQCRRSEVDKRILSRRLSCNKQGYYVKMKNHYGPPRKTRTSTREGCKAMMLVKVNKSDKWVVTRFVKEHTHPLI 132 9*******************************************999****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.2E-25 | 44 | 132 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MNLETGAATI DCSAESQLVA CEDNVVREPF IGMEFESEDA AKGFYDDYAK RVGFIMRIDQ 60 CRRSEVDKRI LSRRLSCNKQ GYYVKMKNHY GPPRKTRTST REGCKAMMLV KVNKSDKWVV 120 TRFVKEHTHP LIASGCSSRN AMDKKDRRIL ELSAELEHQD KLCDLYREQL ITFLENVEQQ 180 MELLSKKIEV AVNNVKEIEA EVQKPSNNQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-145 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016470835.1 | 1e-156 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_016470842.1 | 1e-156 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S4A2C9 | 1e-155 | A0A1S4A2C9_TOBAC; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_009779434.1 | 1e-155 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-67 | FAR1 family protein |