PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016470748.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 303aa MW: 34119.5 Da PI: 8.0597

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016470748.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	104	8.1e-33	39	144	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k ltpsdv+k++rlv+pk++ae+h + + e+++ l +ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gDfv+F++++ + XP_016470748.1 39 FEKPLTPSDVGKLNRLVIPKQHAEKHfplngtqNDSGEKGFLLNFEDELGKLWTFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDFVLFERHRLD 133 99*************************999844445899***********************************************75448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + + +++++r+ XP_016470748.1 134 GDRTFIGWRRR 144 88899999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.0E-40	30	148	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.88E-31	35	142	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.42E-31	37	134	No hit	No description
SMART	SM01019	1.6E-26	39	145	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.001	39	145	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.2E-30	39	145	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MESTRKSSSP TYKNQTTPTS LCPNSNRLEE NEIPKERLFE KPLTPSDVGK LNRLVIPKQH 60 AEKHFPLNGT QNDSGEKGFL LNFEDELGKL WTFRYSYWNS SQSYVLTKGW SRFVKEKKLD 120 AGDFVLFERH RLDGDRTFIG WRRRNAAAGA TVLEQESGIA PPGGGGGGWG QVYYGGSGHP 180 YPSAGVPYQP DCLHAVRRTM HNQTAANGNN TRRQVRLFGV NLAECEVDES LWSEPSTSDG 240 SSTPSHHQQS HEYQGQAGQL HYQYQVHCSN PSAPASSHAK NNHHNNMDVD YSRDMNHMRY 300 HQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-46	35	144	4	113	B3 domain-containing transcription factor NGA1
5os9_B	1e-46	35	144	4	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016470748.1	0.0	PREDICTED: B3 domain-containing protein At2g36080-like
Swissprot	Q8GYJ2	3e-63	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A1S4A292	0.0	A0A1S4A292_TOBAC; B3 domain-containing protein At2g36080-like
STRING	XP_009588142.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3801	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	2e-65	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]