PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470693.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 283aa    MW: 31188.9 Da    PI: 8.1614
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470693.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.59.1e-19201235135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  XP_016470693.1 201 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 235
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.1E-7412278IPR016679Transcription factor, GATA, plant
SMARTSM004012.5E-16195249IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.438195231IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-14197259No hitNo description
Gene3DG3DSA:3.30.50.104.7E-15199233IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.34E-13200257No hitNo description
PROSITE patternPS003440201226IPR000679Zinc finger, GATA-type
PfamPF003201.2E-16201235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNSLPNSQHS FTLPSLFFSP EGMDCTVDEF LVDELLDFSN NCSTENEEHP QGYNGKKPEK  60
VEAENVTNLS GKQDFGELHF PENDEDNLEW LAHFVEDSFT YTAGKLPNQG EMKTPVQDSK  120
SCFTTPVQTG SRTKRTTAAR VWSLSLTESA STSSSSSSTT TTMSFSLSPC IVHTAESIVR  180
KPAANKRRKK AAGGGVQPRR CSHCGVQKTP QWRAGPMGAK TLCNACGVRF KSGRLLPEYR  240
PACSPTFSTQ LHSNNHRKVL EMRRKMEVEG GGLARPGSEF LKN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588688.20.0PREDICTED: GATA transcription factor 5-like
RefseqXP_016470693.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH579e-56GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1S4A2350.0A0A1S4A235_TOBAC; GATA transcription factor
STRINGXP_009588688.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.14e-47GATA transcription factor 7