PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470528.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 714aa    MW: 79594.7 Da    PI: 5.7768
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470528.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07120141426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C ff+r G+C+ Gd+C F+H 
  XP_016470528.1 120 VPCVFFQR-GICSKGDNCAFMHA 141
                     69******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.7932655IPR000571Zinc finger, CCCH-type
PfamPF156634.3E-112781No hitNo description
SMARTSM003560.00232754IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.0945783IPR000571Zinc finger, CCCH-type
SMARTSM003560.435982IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342116143IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6117142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6118141IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-5120141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4121141IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MVGPTPPLPQ LQTQPPAPSS AEDEALKRNT DCVYFLASPL TCKKGSECEY RHSDMARLNP  60
RDCWYWLHGN CLNPKCAFRH PPLDGFLEAQ APTVIGSSVA PVVSVAPMPQ VPYASSKQGV  120
PCVFFQRGIC SKGDNCAFMH APNSISSKPL QPPVSTASSE TPIAKNAFGG IQNAVQGKKL  180
PQTNHPKPSV LPKPVWKLEN HLTKKENTFD EKVLPPNSVI SRENTRYKPT SMPATNGNSL  240
SGPNRVQQPI GLDDHSSMQN KDDEISREPS PGFDVLVDDE LRGSDYYHEE DQYGGTRSNG  300
GRNEYDMGDS ADYDSVADID RDMYRDGRGY DSYDRLPSRY AWEQPIASSE RIPGGSAHLE  360
RRRYGTVDRP EQVKMSDLRH RLSKHRRGNG LKSVIGHDFS SEKNVEDRAN KSSRRDAHYV  420
PSHDSSLSGR LRGRIKLPVR SSSPTDRAEL RLNREMDRAR YRGRLSSERP QLSSYQGRLQ  480
DRIKGRVQED LSNGDRNNRG PRLRKDIIND NNSNFVRPKS LVELKVRKTA ESNEQNLNEQ  540
QHLGKRKFQK LDSGEDQSFK GPMSLQEILK RKRGGGAGMT SGGSEDYEHE RKGQTVMTSM  600
TTGNVVDFPS AIIKNGSGLS IQQEEESKLA ADHQSPLRRS ANELEAEEEM IVEGADAQGH  660
DEGYDQVDGD DDYEPVEGED YTLDEGENGD LDDEYLDDDD DGDDFAKKLG VVSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470528.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like isoform X1
RefseqXP_016470599.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like isoform X2
TrEMBLA0A1S4A1X70.0A0A1S4A1X7_TOBAC; zinc finger CCCH domain-containing protein 17-like isoform X1
STRINGXP_009623001.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633