PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470527.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 348aa    MW: 37859.3 Da    PI: 6.313
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.8e-17237271135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_016470527.1 237 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 271
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.4E-8311325IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.479231267IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-16231281IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-14233294No hitNo description
Gene3DG3DSA:3.30.50.108.2E-14233268IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.20E-13236283No hitNo description
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
PfamPF003201.3E-14237271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEASDFFVSG YFSNAGDEQN SNNNNNNNNN NFTVDDLLDF SKEDEVMTDA FFDSFTGNSA  60
DSSTVTVVDS CNSSVSGENG HFNGNISCRS FTDAPFPSSE LCVPYDDLAE LEWLSNFVEE  120
SFSSDDVQNL QLIPVTNINS AANNTTDSSS SATTISAGTN SPPAFPVDTS VPGKARSKRS  180
RAAPCDWSSR LQLLLSPVTS SSESNDAAAN NSTSATAKAT KAPSKKRESI ETPGRKCLHC  240
ASEKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVSAKHSN SHRKVLELRR  300
QKEFQRHPAH HHQHQLISQT SIFGVSNGGD DFLLHHHQNC GPNFRHLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470527.10.0PREDICTED: GATA transcription factor 12-like
TrEMBLA0A1S4A1G80.0A0A1S4A1G8_TOBAC; GATA transcription factor
STRINGXP_009628152.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-73GATA transcription factor 12