![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016470159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 593aa MW: 66954.1 Da PI: 5.013 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 295.7 | 1.2e-90 | 221 | 591 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPi 90 lv+lLl++Ae v++++++la++l++r as++g+p+qRl +yf++ L++r+ rs+ + + + ++ + + +a+ + +++ P+ XP_016470159.1 221 LVHLLLAAAEEVNNQQFHLASKLISRCMWVASESGNPVQRLSFYFAKSLEERIDRSTGRYTCTDEDRHL---KciktmALGTNSAFLTCHQLLPF 312 68*****************************************************43332222222222...122222333444555689***** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ++ +++ q+Ile v++++++H iDf+i G+QW L+qaLa++ ++ l+iT+vgs ++ke+ e tg+ L++fA++lgvpf+f+v+ + XP_016470159.1 313 SQVMQFAGIQTILEHVKSAKKIHLIDFNIRSGIQWTVLMQALAEKGdSPIKLLKITAVGS---TEKEKFEVTGNTLHSFAKSLGVPFSFDVVFLS 404 ********************************************984455599*******...579***************************** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +++d++ e+ +++ +E++aV + l ++ ++ +le+ ++k+v+s+ P+v+v+ e ea+hns+sFl+rf+e+l +y a+fd++e + r+s XP_016470159.1 405 DMKDFKKESVNIEADETVAVYCNTVLRTMIPKPDCLEN----LMKVVRSIGPTVIVIGEVEANHNSPSFLNRFIETLFFYGAFFDCFEDCMDRDS 495 ******************************99999999....***************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 r+++E +++g+ i+n+va+eg+er+ r+ +l+ Wr+ + + G+ + +lse+a qa+l+++k++ + +++++ + l++gWk+ p+ s+S W XP_016470159.1 496 PCRRTIEGVYFGEGIRNIVAAEGKERFTRNVKLQVWRAFFARLGMVEEELSESAWYQANLIVKKFAqGSCCNLHKDGKGLIIGWKGTPIHSLSIW 590 ******************************************************************77779************************ PP GRAS 374 r 374 + XP_016470159.1 591 K 591 8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.226 | 195 | 570 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-88 | 221 | 591 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 593 aa Download sequence Send to blast |
MVICPGIGTM ANVSISNDNF TDFQGDHLKG YERNELVING VEDPWFELED CTDIDSVYSI 60 CGLINEENTS NEQVTTNLLE DQQQSISNWM QSQFSNNTDQ IKSSIEAPKD DDFQPQVLEL 120 IGHSSSEKPN PFSLASFELL NNYGRLIKKS SEENLNISNA LSYEARACNN HKLSMEEILM 180 VAGERYIQYS TQRLDGLSMF IHPYGSALSG LSIEETRDME LVHLLLAAAE EVNNQQFHLA 240 SKLISRCMWV ASESGNPVQR LSFYFAKSLE ERIDRSTGRY TCTDEDRHLK CIKTMALGTN 300 SAFLTCHQLL PFSQVMQFAG IQTILEHVKS AKKIHLIDFN IRSGIQWTVL MQALAEKGDS 360 PIKLLKITAV GSTEKEKFEV TGNTLHSFAK SLGVPFSFDV VFLSDMKDFK KESVNIEADE 420 TVAVYCNTVL RTMIPKPDCL ENLMKVVRSI GPTVIVIGEV EANHNSPSFL NRFIETLFFY 480 GAFFDCFEDC MDRDSPCRRT IEGVYFGEGI RNIVAAEGKE RFTRNVKLQV WRAFFARLGM 540 VEEELSESAW YQANLIVKKF AQGSCCNLHK DGKGLIIGWK GTPIHSLSIW KFL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-44 | 239 | 591 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC238918 | 0.0 | AC238918.11 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016470159.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S4A0M9 | 0.0 | A0A1S4A0M9_TOBAC; DELLA protein RGL1-like | ||||
STRING | XP_009628660.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03450.1 | 7e-50 | RGA-like 2 |